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Taking Stock of the Known and Unknown Microbial Space
… of microbial genomes becoming available to the global research community.  Published January 17, 2025 in Science … genomic biodiversity. Using publicly available genome sequence data generated over the past three decades, their … to curate and cultivate what is still unknown.  “We took a deep dive into over 1.8 million bacterial and archaeal …
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Climate Change Threatens Base of Polar Oceans’ Bountiful Food Webs
… than previously suspected. “That would cause significant consequences on the entire food web, and therefore ecosystem … and gene expression. Sailing from pole to pole on four research cruises, they dipped their self-closing containers … After isolating the algal communities on filters, they sequenced DNA ‘marker’ gene sequences to identify the …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of … minority of cultivated bacteria, still persists to date. Research Team    … is also reflected in the strongly biased representation of sequenced genomes in the public domain, the bulk of which … Hebrew University of Jerusalem , Israel Chris Rinke: Research Officer, Australian Centre for Ecogenomics Patrick …
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JGI@25: Studying Sorghum’s Survival Skills
… but other important crops as well. In 2009, the JGI sequenced and analyzed the first reference genome for … genome, the JGI has also continued to collaborate on research to understand how sorghum fares so well in harsh … aligning it with over 50 other diverse sorghum genomes. Deep sequencing and genetic linkage analysis improve the …
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A near complete snapshot of the Zea mays seedling transcriptome revealed from ultra-deep sequencing
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Genome Sequence of Methanosarcina soligelidi SMA-21, Isolated from Siberian Permafrost-Affected Soil
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Mining New Frontiers: The Critical Minerals and Materials Joint Call
… proposal call . This represents a unique opportunity for researchers to request the capabilities and expertise of both national user facilities in one research proposal.  Submit research proposals  here that integrate genomics with … Molecular Foundry is free of charge for non-proprietary research; the vast majority of projects fall into this …
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The Power of One, Amplified
… genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting large-scale … snippets of microbial genomes directly from environmental sequence data, by piecing each genome together from large … environment. Summary Dewar Creek is a remote hot spring, deep within the British Columbia backcountry (Purcell …
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Mapping the Earth’s Hidden Fungal Kingdom
… fungi have spread quietly throughout our planet. From the deepest ocean floors to Antarctic valleys, these organisms … about 200,000 fungal species have been named. Among those sequenced, roughly half of all genes have completely unknown … of books written in a yet-to-be-deciphered language. Researchers with the Department of Energy (DOE) Joint Genome …
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Virus Discoveries that Keep Getting Bigger
… Sequence-based studies — from metagenomics to single-cell … isolated viruses in eukaryotic  microbial hosts. Lately, researchers have used culture-independent approaches to gain … of these approaches. One way of detecting giant viruses in sequence data is read-mapping: using giant virus reference …
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JGI-USCCN Strain Sequencing Opportunity
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A Model System for Perennial Grasses
… genomes offer insights to drought tolerance. The Science Researchers have developed a genomic model to study drought … with multiple copies of its chromosomes. Switchgrass has deep roots that allow it to access nutrients easily from a … Through the JGI’s Community Science Program , JGI sequenced and assembled near-complete genomes of P. hallii …
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