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Accelerating Metagenomics Discoveries with Deep Learning
… of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural similarities in proteins that low sequence identity may belie. The technology he’s using is … Deep learning algorithms can vectorize faces… … so, why not proteins?         … The U.S. Department of Energy …
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Comparative Genomic Insights into Ecophysiology of Neutrophilic, Microaerophilic Iron Oxidizing Bacteria
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Active anaerobic methane oxidation and sulfur disproportionation in the deep terrestrial subsurface
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Prediction, enrichment and isolation identify a responsive, competitive community of cellulolytic microorganisms from a municipal landfill.
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NeLLi — Symposium on New Lineages of Life
Overview of Symposium Goals Metagenomic and single-cell sequence data have provided a means to access novel … symposium series will provide an overview of the bacterial, archaeal and microeukaryote diversity cataloged and taxonomically classified to date. Under the “sequence to function’ umbrella, this symposium will further …
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Learning to Look
… and a unique chronic infection cycle. “We’re not sure why we systematically manage to miss them; maybe it’s due to … first worked on a reference dataset that included genome sequences known to be affiliated with the Inoviridae. “What … in size and function to those in typical bacterial or archaeal genomes, the sequence is most likely not an …
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How to Target a Microbial Needle within a Community Haystack
The Impact Despite great strides in generating genome sequences for members of the microbial world through bulk … microbes within metagenome samples and associate their sequences with their roles within their environments. … groups from complex natural communities. This type of enrichment could be applied in a number of ways including …
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Pyrosequencing Reveals High-Temperature Cellulolytic Microbial Consortia in Great Boiling Spring after In Situ Lignocellulose Enrichment
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Assembly and Succession of Iron Oxide Microbial Mat Communities in Acidic Geothermal Springs
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Hypoxic survival requires a 2-on-2 hemoglobin in a process involving nitric oxide
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Contrasting Pathways for Anaerobic Methane Oxidation in Gulf of Mexico Cold Seep Sediments
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Marine Microbe Contains Multitudes
… of SAR324 cells and their gene expression, the team then sequenced community genomes and expressed gene transcripts … ecotypes because, historically, they have used the sequence of a “marker gene,” namely the 16S ribosomal RNA … bioinformatics tools designed for analysis of DNA and RNA sequence data.  … Datasets … BBTools …
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