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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to … to climate change and devastating fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years … through the Cacao Genome Database project. The genome sequence was assembled by the plant team at the  HudsonAlpha …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… The Sequence to Function: Applications and Analysis for the Future (SFA²F) meeting brings together …
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The obligate alkalophilic soda‐lake fungus Sodiomyces alkalinus has shifted to a protein diet
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) and … of proteins in order to conduct more efficient protein sequence alignments. He also aims to detect structural … Deep learning algorithms can vectorize faces… … so, why not proteins?         …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable … and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… Researchers looked across many organisms to see that … to look at how this enzyme family evolved across 90 species. “One unique thing about this work was our focus on … to the way many organisms function, they have a sense of why nitrogen metabolisms can be so varied.  As evolution has …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to … microalgae, or diatoms. Through the Tara Oceans Expeditions that took place between 2009 and 2013, the  Chaetoceros … provide more information on these ecologically relevant species. Another focus area was inter-organismal …
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Permanent draft genome of Thiobacillus thioparus DSM 505T, an obligately chemolithoautotrophic member of the Betaproteobacteria
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Comparative genomics analysis of drought response between obligate CAM and C3 photosynthesis plants
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JGI Portals
… The JGI’s data stewardship expertise and infrastructure enable a broad … Download plant, algal, fungal and microbial genomes and metagenomes — … GOLD is a web resource for comprehensive access to information … of microbial communities based on their metagenome sequence, in the context of reference isolate genomes …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. … short life cycles and can be easily transformed, traits that make them easy to work with bioinformatically and in the laboratory. “We are fortunate because the progenitor species of  Brachypodium hybridum are still extant (whereas …
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DNA Synthesis Program
… The JGI’s DNA Synthesis Program supports a wide range of projects, from single-gene synthesis to the … with U.S. and international scientists to drive innovations that align with DOE's missions. … Program aims to generate large datasets to explore sequence-function relationships, advancing the discovery of …
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