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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). “By offering … for researchers in this area. “Surprisingly, this was the first workshop of its kind on SIP metagenomics,” Malmstrom …
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Yasuo Yoshikuni
… officer at a clean technology startup, Bio Architecture Lab, Inc. (BAL), where he used systems and synthetic biology … unique sugar polymers in macroalgae and developing the first microbial platform technologies unlocking the … laude ) Ph.D. in Bioengineering, University of California, Berkeley Postdoctoral training in Biochemistry, University …
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From Competition to Cooperation
… there were previously no genomes of symbiotic species available: 73 saprotrophs and 62 mycorrhizal species. The 62 … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). All of the … builds upon several papers and workshops, starting with the first mycorrhizal genome sequence generated by the JGI more …
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Cataloging the Microbes that Manage the Health of River Systems
… to standardize the process. They noted this may be the first publicly available, river-focused microbial resource that provides … river sampling program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab) through the JGI Community Science … .  Through this collaboration, in 2017, they published the first genome sequence of a cold-adapted microalga: the …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… of the earth, but most species do not grow easily in the lab. To access the genomes of uncultured  microbes , … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory, is heavily invested in being … sequencing comes in. Single-cell genome sequencing involves taking a single cell and isolating it for analysis. Once …
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Gut Fungi: Unexpected Source of Novel Chemicals
… of four anaerobic fungal species has revealed, for the first time, that this group is unexpectedly powerful: they … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory. More recently, O’Malley’s team has begun to …
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An Automated Tool for Assessing Virus Data Quality
… story of the blind men who encounter an elephant for the first time. Based on the single body part each blind man … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), has developed a command-line tool …
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Viruses Reprogram Cells into Different Virocells
… the infected microbial cells as virocells, a change in name first described in 2011 which reflects the metabolic changes … Howard-Varona, a postdoctoral researcher in Sullivan’s lab. Their research was enabled in part by the  Facilities … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), and the  …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… of this enzyme family,” said Sang-Woo Han, one of the co-first authors of this work.  Han is an Assistant Professor … Genomics and Systems Biology Division of Lawrence Berkeley National Laboratory (Berkeley Lab). He completed … DNA Synthesis Science program, underscored the value of taking a look at the AT family. “Essentially, the …
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… at the Integrative Genomics Building, the JGI’s home at Berkeley Lab, as representatives highlighted the benefits of this … be a part of it all. Among them was Travis Lawrence , the first graduate student intern from the 2014 cohort. After …
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An Integrated Dataset to Understand Ecosystem Interaction
… features to large ecosystem-level processes for the first time. By collecting data from 27 different poplar ( … feedstock. Public accessibility to the data made available through this multidisciplinary approach allows … a DOE Office of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). All of this …
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