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… equipment manufacturer KLA-Tencor before joining the JGI in 2002. Initially focused on building tools to facilitate expert … PhD in Physics, Cornell University, NY … RJ Craig et al., 2023.The Chlamydomonas Genome Project, version 6: Reference …

… scientists usually employ two different methods; shotgun metagenomic sequencing and single-cell sequencing. For years, … genomes from microorganisms are shotgun (group) metagenomic sequencing and single-cell (individual) … like plasmids, the picture is far from complete.  In 2021 , scientists at St. Jude Children’s Research Hospital …

… 2022 marks the JGI’s 25th anniversary. Over the last year, … genomics and transcriptomics to discover another advantage these fungi wield: the capacity to form enzyme …

… of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of … allow researchers to focus on specific microbes within metagenome samples and associate their sequences with their … User Facility, is supported under Contract No. DE-AC02-05CH11231. This study was funded by the Max Planck Society. …

… communities, with results published in the  November 2022 issue of Microbiome . High-throughput stable isotope …

… some songbird W chromosomes — suggest that they are advantageous enough to have evolved multiple times independently. … by the NSF Dimensions of Biodiversity Program (DEB-1542509 to S.D., DEB-1542486 to LBS, and DEB-1542599 to M.O.). Support was also …

In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA are close …

Waldo will have all of these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists … use to conduct a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to … search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 …

… in a wide range of research fields. A public repository of 52,515 microbial draft genomes generated from environmental … and the  DOE Systems Biology Knowledgebase (KBase) . Metagenomics is the study of the microbial communities in the … sequencing and analysis. “Using a technique called metagenome binning, we were able to reconstruct thousands of …

… and longtime JGI collaborator Sabeeha Merchant’s group. In 2011, they inventoried a swath of blueprints to find parts … The end result was a list of genes, termed  The GreenCut2 Resource . It details 597 genes coding for proteins that … apt name for a Jane Doe After screening hundreds of GreenCut2 proteins, Blaby-Haas emerged with several ideas of …

… plants did you all look at? Avinash: We started off with 12 plants, which are JGI Flagship Plants, mostly related to … we are looking at 18 different species, which included over 2000 RNA Seq libraries. As I previously mentioned, this is … to standardize the experimental protocols. Then, in 2020, seven more groups joined the project to contribute to …