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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is … In order to determine the genome structure of SAR324 cells and their gene expression, the team then sequenced … metatranscriptomes), as well as the genomes of single cells of the uncultivated SAR324. The constellation …
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JGI@25: Strengthening Soybean
In honor of the JGI's 25th anniversary in 2022, we have … and energy advantages explain why soybean is a flagship genome of the JGI’s Plant Program.    While soybean has … was just like rediscovering genetics, with the evolution of sequencing technologies and the evolution of …
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Raman-based sorting of microbial cells to link functions to their genes
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High-Throughput Single-Cell Transcriptome Profiling of Plant Cell Types
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How to Target a Microbial Needle within a Community Haystack
… developed, tested and deployed a pipeline to first target cells from communities of uncultivated microbes, and then … for members of the microbial world through bulk community sequencing (metagenomics) and single-cell genomics, the vast majority of microbes that …
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Kanwar Singh
… part of his time assisting JGI users by processing their single cell samples using our high throughput pipeline. He also explores new methods for creating sequencing libraries and optimizing various processes. …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… species? Or, do they tend to specialize, infecting just a single host? Another wrinkle in the mystery is that viruses … kill outright, replicating so thoroughly that they lyse the cell — a process called lytic infection. But some viruses … Cone Pool in Mono County, California, scientists have used sequencing methods for the first time to comprehensively …
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High‐Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping‐by‐Sequencing
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Fungal heavy metal adaptation through single nucleotide polymorphisms and copy‐number variation
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Multiplex knockout of trichome-regulating MYB duplicates in hybrid poplar using a single gRNA.
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A Collaboration to Improve Plant Genome Annotations Across Species
… of RNA molecules transcribed from all the genes within a cell or tissue at a specific time or under specific … comparative transcriptomics. *The HudsonAlpha Genome Sequencing Center works with scientists at the JGI a lot. In … handling 18 different species is beyond the capacity of a single lab. Growing different species poses significant …
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Doubling Down on Known Protein Families
Using a novel computational approach, researchers confirm … only able to clearly identify what falls within that single beam. When it comes to microbial communities, … replicating a whole community is impossible.  Metagenomic sequencing allows researchers to study the entire genetic …
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