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Cataloging the Microbes that Manage the Health of River Systems
… Database provides details on river microbes in 90% of US … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing … The work conducted by the National Microbiome Data Collaborative (https://ror.org/05cwx3318) is supported …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
… influence in their chosen field or fields through the publication of multiple highly cited papers during the last … were all instrumental in the development of the Novel Metagenome Protein Families (NMPF) Catalog . Published in the October …
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Discovery and annotation of small proteins using genomics, proteomics, and computational approaches
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Promoting the Power of Viral Metagenomics
… published in the journal  Annual Review of Biomedical Data Science . The following guest piece was written by … hydrothermal vents – and computationally identifying which sequences represent viruses that were present in the sample. … and discuss some of the current challenges faced by those using metagenomics to try to understand the far-reaching …
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A Community Resource for Secondary Metabolite Researchers
… more than 13 million BGCs in the catalog at the time of publication, it is the largest repository of BGC sequence … public repository of BGC sequences that come pre-annotated using multiple commonly used sequence analysis tools is a … and secondary metabolites information from isolate and metagenome data.   The SMC ( smc.jgi.doe.gov ) is designed …
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Metabolomics Technology Group
… Our lab is using mass spectrometry based metabolite profiling to provide direct biochemical datasets to improve our understanding of microbial …
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Annotation of metagenome short reads using proxygenes
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Comparative Biochemical and Structural Analysis of Novel Cellulose Binding Proteins (Tāpirins) from Extremely Thermophilic Caldicellulosiruptor Species.
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Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach
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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … system, reached  Emiley Eloe-Fadrosh , who heads the  Metagenome Program . “After discussing the project with him, … assembly, and even an introduction to data analysis using the  IMG/M system . A Comprehensive Learning …
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BioPig: a Hadoop-based analytic toolkit for large-scale sequence data
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… requires rigorous research, written skill, above all else, determination. Rhondene Wint, an alumna of the DOE Joint … current PhD student, reached this milestone with a recent publication in Molecular Biology and Evolution . “It’s my … acids are assembled, which then band together to build proteins. What Wint and her mentors discovered in the …
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