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An Integrated Dataset to Understand Ecosystem Interaction
… outlined in  Scientific Data connects molecular features to large ecosystem-level processes for the first time. By … Dubbed “the” bioenergy tree, poplars are known for their genetic diversity. They hold economic value as both biofuel … (LANL), and DE-AC05-76RL01830 (PNNL). … BioScales project on JGI Genomes Online Database … BioScales project …
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Green Algae Reveal One mRNA Encodes Many Proteins
Gene expression in eukaryotes was long held to be monocistronic – that is, a single gene makes messenger RNA, which encodes a single protein. Gene expression in … to these challenges.  DOE’s Office of Science is the largest supporter of basic research in the physical sciences …
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A large sequenced mutant library – valuable reverse genetic resource that covers 98% of sorghum genes
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Meanders as a scaling motif for understanding of floodplain soil microbiome and biogeochemical potential at the watershed scale
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Close association of RNA polymerase II and many transcription factors with Pol III genes
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Marcel Huntemann
Marcel is in charge of several production pipelines (gene calling, functional annotation and methylomics) that … automating intra-department data exchange and assists with large scale computations on R&D projects. …
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Making a Lichen Together
… alpine and high latitude ecosystems, deciphering their internal molecular mechanisms can help researchers better model … and the microalga,  Asterochloris glomerata . To see how gene expression changes when living together versus apart, … nitrocellulose filters in Petri dishes. The scientists also sequenced the fungus and photobiont’s genomes and compared …
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The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
Fashioning DNA outside a cell is key to interrogating what genes do, how they work, and applying them to environmental … more than 10 papers, including two Nature Plants publications, in five years, have come out of the JGI-supported project. “The JGI DNA Synthesis Science Program has been …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text … factor binding sites across many different genomes. These atlases of transcription factor binding sites can help you … Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that …
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Integrating Experimentation with Data
Automated Laboratories: Integrating Experimentation with Data.” The event will take place at the Seattle Marriott … and synthetic biology AI/ML-enabled laboratory automation, data integration and modeling This three-day joint user … community access to cutting-edge capabilities for omics-based and analytical characterization, imaging, and …
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The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants
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