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Simon Roux
… viruses to their host(s), collaboration with JGI users for analyzing viral datasets, and the organization of … the Viral Genomics group at the JGI to further explore the ecological and evolutionary drivers of virus-host dynamics … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Micro-Scale Applications Group
… microfluidics/microdroplet technology in order to enhance the quality of single-cell genomes and directly link … the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical … us to select specific uncultivated microbes for sequencing based on their level of metabolic activity (BONCAT+FACS). To …
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The landscape of Chlamydomonas histone H3 lysine 4 methylation reveals both constant features and dynamic changes during the diurnal cycle
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RegTransBase – a database of regulatory sequences and interactions based on literature: a resource for investigating transcriptional regulation in prokaryotes
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Rapid Kinetic Characterization of Glycosyl Hydrolases Based on Oxime Derivatization and Nanostructure-Initiator Mass Spectrometry (NIMS)
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Crawling through time: Transition of snails to slugs dating back to the Paleozoic, based on mitochondrial phylogenomics
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JGI Contributes Eight to 2023 Highly Cited Researchers list
Researchers from the JGI recognized for their “significant influence in their chosen field or fields through the publication of multiple highly cited papers during the last … that identifies and classifies mobile genetic elements based upon their gene content and their genetic sequences. …
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Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as ensure cohesive data standards, the JGI partners with a number of facilities.  … …
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Examples: Successful LOIs & Submissions
… submissions to our CSP New Investigator, CSP Functional Genomics, and Facilities Integrating Collaborations for User Science … elevated temperatures … Adaptive strategies in a cosmopolitan and abundant soil bacterium: genetic microdiversity or …
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Special Initiatives & Programs
Overview The JGI provides sequencing, synthesis, and targeted metabolomics support for DOE-BER funded awards, … and Environment (iSEE) and the Carl R. Woese Institute for Genomic Biology (IGB), and it will include 17 partner … to sustainable, economically viable production of bio-based products and advanced biofuels. The center focuses on …
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The microbial ecology of permafrost
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