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Exploring microbial functional biodiversity at the protein family level—From metagenomic sequence reads to annotated protein clusters
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ContScout: sensitive detection and removal of contamination from annotated genomes
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Genome assembly and annotation of microalga Nannochloropsis oceanica C018.
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A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera)
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Multi 'omics comparison reveals metabolome biochemistry, not microbiome composition or gene expression, corresponds to elevated biogeochemical function in the hyporheic zone
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The crystal structures of the tri-functional Chloroflexus aurantiacus and bi-functional Rhodobacter sphaeroides malyl-CoA lyases and comparison with CitE-like superfamily enzymes and malate synthases
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… and genome size from small, to large and even giant. The genomes of giant viruses are on the order of 100 times the … viruses (NCLDV) supergroup. The expansion of the diversity for large and giant viruses offered the researchers insights … genomes of uncultivated giant viruses from environmental sequences across the globe, then using these sequences to …
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Fungal Friends or Foes in Plant Roots
… plant host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots … health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. … from natural Arabidopsis populations around Europe. The JGI sequenced and annotated 41 fungal isolates from the …
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Finding the Fermenters
… the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … browser that allows other researchers to study the genomes and predict the metabolic abilities of these … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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IMG ER: a system for microbial genome annotation expert review and curation
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Discovery and annotation of small proteins using genomics, proteomics, and computational approaches
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Improved chromosome-level genome assembly and annotation of the seagrass, Zostera marina (eelgrass)
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