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Comparative Genomics Analysis of Trichoderma reesei Strains
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Chromosomal integration of complex DNA constructs using CRAGE and CRAGE-Duet systems
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Natural Prodcast Episode 21: Elizabeth Parkinson
… schedule. This should be coming out on the first Thursday of the month, just like I promised. Now I just have to make … outreach program to get kids interested in microbiology and microbial chemistry. All good stuff, and I hope you enjoy … nearby. And of those once we did the predictions, about 140 unique cyclic peptides. And from that, about 130 of them …
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Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
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Len Pennacchio
… Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging … Scientist at Lawrence Berkeley Laboratory, and Adjunct Professor at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where he uncovered the …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine Learning — JGI … compound. By feeding a microbial community a modified version of a specific chemical, where ordinary Carbon-12 … for a SIP-focused workshop at the JGI in the fall of 2024. “ We wanted to get into the nitty gritty with the people …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… early Earth conditions. The Science Through a combination of sequencing tools and techniques applied to samples collected from acidic iron-oxide microbial mats in Yellowstone National Park over time, … metagenome assemblies, transcriptomes and single amplified genomes from samples collected from several locations to …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  version … deployed (as the foundation for Phytozome v10) back in 2014.  Several components of that codebase are no longer … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Integrative analysis of multimodal mass spectrometry data in MZmine 3
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Integrating microarray analysis and the soybean genome to understand the soybeans iron deficiency response
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Comparative analysis of carboxysome shell proteins
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Comparative and pangenomic analysis of the genus Streptomyces
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