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SoyDB: a knowledge database of soybean transcription factors
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Natural Prodcast Episode 6: Marc Chevrette
… metabolism.  DAN: Hi again, and welcome to Episode 6 of Natural Prodcast. What you’re going to get here is the very first episode we recorded. You’ll probably notice that … the secondary metabolism side of things was looking at genomes and seeing where the really hard things to sequence …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
… recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). Roux leads the Viral Genomics group within the JGI Metagenome Program, and coordinates the development of the virus and plasmid workflows for the …
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Prepublication data sharing
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Clustering Categorical Data
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Mapping the Earth’s Hidden Fungal Kingdom
… one of the world's most comprehensive collections of fungal genomes. A sweeping analysis published in Nature Reviews … Earth's fungal kingdom. The manuscript reviews about 200 publications linking evolutionary history and innovations … diversity. Examining databases like MycoCosm , the JGI’s online fungal genomics resource platform, reveals a stark …
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Plant Microbial Interactions Group
… Plants are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including … symbionts, detrimental microbial pathogens, and associated viruses that all contribute to a dynamic ecosystem. We are … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, …
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Poisson hurdle model-based method for clustering microbiome features.
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … next firestorm. The majestic sentinel oaks of the Golden State have been succumbing to a pathogen. This … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a …
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Conserved unique peptide patterns (CUPP) online platform 2.0: implementation of +1000 JGI fungal genomes.
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Annual Meeting 2027
…   Save the Date: March 16–18, 2027 The next JGI Annual Meeting will be held in March 2027 at the Oakland Convention Center. Check this page as further details become available. Sign up for our newsletter to receive updates.    … Stefani Ferreira , JGI Administrative and Logistics Support  …
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Novel Features of the Polysaccharide-Digesting Gliding Bacterium Flavobacterium johnsoniae as Revealed by Genome Sequence Analysis▿ †
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