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Vertical and horizontal gene transfer shaped plant colonization and biomass degradation in the fungal genus Armillaria
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A One-Stop Shop for Analyzing Algal Genomes
… data portal allows anyone to freely investigate the genes of more than 100 algae. The Science Interested in the genomes of algae? You now have one place where you can … metagenome datasets, MycoCosm for comparative analysis of fungal genomes, and Phytozome for comparing plant genomes. …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … for habitat restoration and as a feedstock for biomass-based biofuel production. As seen with many commonly … alters genomic diversity, fitness, and adaptability. Using a combination of genomic, quantitative genetic, …
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Gene Expression: From On-Off Switch to Dial
… of essential genes in metabolic networks that were missed using traditional approaches. This novel form of … researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Laboratory (Berkeley Lab). Researchers used a library-based approach to fine-tune gene expression. They tested …
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A pipeline for targeted metagenomics of environmental bacteria
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The genome of Xylona heveae provides a window into fungal endophytism.
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MycoCosm portal: gearing up for 1000 fungal genomes
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A parts list for fungal cellulosomes revealed by comparative genomics
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Leveraging single-cell genomics to expand the fungal tree of life
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Genome-scale phylogeny and comparative genomics of the fungal order Sordariales
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JGI@25: Roots of a Mutualist Relationship
… energy and environmental challenges. In March 2008, the genome sequence of the forest fungus Laccaria bicolor was … (INRAE). Today, there are nearly 200 mycorrhizal fungal genomes publicly available on the fungal portal MycoCosm, many sequenced through the JGI 1000 …
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Forming Scientific Connections and Building Community
This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Zhong Wang Project: “ Improving biosynthetic gene cluster annotation by leveraging a large genomic model ” Leonel … Sajeet Haridas & Asaf Salamov Project: “ Improving the JGI fungal mitochondrial annotation pipeline ” Anna Kucherova : …
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