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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that co-infect … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … 28,000 unique MCP sequences.  Further analysis led to the identification of 328 “high quality” (based on completeness) …
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Enriching public descriptions of marine phages using the Genomic Standards Consortium MIGS standard
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Plotting a Model for Virus-Host Warfare Deep Below Ground
…   Visualizing a novel, candidate viral genome found in the deep … Science Altiarchaea are carbon-fixing microbes and targets of multiple viruses in Earth’s deep subsurface. They are abundant … Sloan foundation (grant number G-2017-9955), the Ministry of Culture and Science of North Rhine-Westphalia …
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IMG/PR: a database of plasmids from genomes and metagenomes with rich annotations and metadata
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JGI@25: Tracking & Subduing the Plague of California’s Oak Woodlands
… In honor of the JGI's 25th anniversary in 2022, we have … was released to the public in a highly-cited 2006 publication in the journal Science . This provided a … large-scale “citizen science” project to generate real-time data for modeling and predicting the spread of a plant …
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The Spirodela polyrhiza genome reveals insights into its neotenous reduction fast growth and aquatic lifestyle
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… 21-23, 2023, attendees joined the JGI Annual Genomics of Energy & Environment Meeting.  A wide array of invited … have been able to explore all kinds of new questions. “How fast do these organisms grow and die in the wild? How much … research (see his  2021 VEGA talk ). A global authority on viruses, Holmes was part of  the initial release the genome …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… Before 2006, Olpidium was one of the many obscure fungi of Chytridiomycota (the … much damage to the hosts, but they are carriers of several viruses (e.g., Lettuce big-vein associated virus LBVaV; … attracted the attention of many mycologists with the two publications of the kingdom-wide, multi-gene phylogeny of …
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Promoting the Power of Viral Metagenomics
… An article summarizing the field of viral metagenomics, authored by JGI … world have been forced to confront the awesome power that viruses have to affect nearly every aspect of our daily … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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BioPig: a Hadoop-based analytic toolkit for large-scale sequence data
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Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
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Natural Prodcast Episode 6: Marc Chevrette
… DAN: You’re listening to the US. .Department of Energy Joint Genome … to “Alice In Wonderland” where the Red Queen just runs faster and faster to stay in the same place. So this race, … This is Episode 6 of Natural Prodcast, our conversation with Marc Chevrette, a …
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