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VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
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Identification of functional single nucleotide polymorphism of Populus trichocarpa PtrEPSP‐TF and determination of its transcriptional effect
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Chemical synthesis rewriting of a bacterial genome to achieve design flexibility and biological functionality
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Accelerating Metagenomics Discoveries with Deep Learning
… with 86 participants in an online workshop to harness deep learning for metagenomic data.  Metagenomic data, or DNA sequencing data gathered from whole samples rather than … that low sequence identity may belie. The technology he’s using is magical; transform any length of amino acid …
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Marine Microbe Contains Multitudes
… A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different … Science Program . The metagenomes were also processed using the JGI-developed software suite, BBTools , and … grant GBMF #3777 (to EFD). The work conducted by the US Department of Energy Joint Genome Institute, a DOE Office of …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… United States, occasionally pulling over to the side of the road to collect small weedy plants and bring them … in leaf angle,” noted Schmutz. “It’s a nice example of de novo discovery and then mapping back to identify candidate … high heat while C3 crops have become less efficient at photosynthesis, a concern as extreme weather events become more …
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Using DNA affinity purification sequencing (DAP-seq) to identify in vitro binding sites of potential Novosphingobium aromaticivorans DSM12444 transcription factors
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Identification, characterization, and gene expression analysis of nucleotide binding site (NB)-type resistance gene homologues in switchgrass
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Generation of Transcript Assemblies and Identification of Single Nucleotide Polymorphisms from Seven Lowland and Upland Cultivars of Switchgrass
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Arachnid relationships based on mitochondrial genomes: Asymmetric nucleotide and amino acid bias affects phylogenetic analyses
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JGI@25: From Life at the Extremes to Editing Genomes
… environmental challenges. Congratulations to Jennifer Doudna of the University of California (UC), Berkeley and … Max Planck Institute! This is the first science Nobel awarded to two women, with Charpentier and Doudna bringing the … nature was using it to do something important.” Related Publications:  A scoutRNA Is Required for Some Type V …
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Metagenome Program
… Metagenome Program uses advanced sequencing technologies to decode the genomes of microbes in their natural environments. … that govern ecosystem processes. This research provides insights into microbial diversity and metabolic … interactions and functions that shape ecosystems. By decoding the microbial DNA in natural environments, the …
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