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DAP-seq Drives Robust Mapping of Gene Regulation
… Multi-species assays yield an unprecedented view of plant evolution and adaptation.    Understanding how … — and integrated these data with single-cell gene expression maps. Together, the scale of data enabled by … to propose multi-genome projects, opening new avenues for comparative regulatory studies across diverse species. …
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CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner
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The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis
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Model Fern Reveals Insight into DNA Thievery in Ferns
… — making it difficult to grasp a deeper understanding of fundamental aspects of fern biology and, more broadly, … gene duplications, and even more ancient gene transfers from bacteria have all armed the plant with an array of … in the land plant tree of life. Ultimately, the resulting comparative framework can inform the efficient production of …
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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management Group, attended a conference in … and organic carbon concentration. From Field Studies to Publication Together as a class, the students learned about … a deeper understanding of both the research process and metagenomics while legitimately contributing to the body of …
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The Genomes OnLine Database (GOLD) v.5: a metadata management system based on a four level (meta)genome project classification
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … (Hall’s panicgrass), by generating two complete genomes from varieties that diverged over a million years ago. The … QTL mapping to find the genomic regions that control gene expression and physiological responses to drought. They …
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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science … studied what happens to the tree’s physical traits and gene expression when the fungus is present. The Impact Black … of Florida collected forest samples of poplar and soil from Washington and Oregon. The cuttings included genotypes …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … a condition known as polyploidy. The multiple copies arise from past genome duplication, which occurs in two basic … by the JGI – and the common strawberry, which is octoploid (eight copies of each chromosome). All of these genomes are …
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The mycorrhizal symbiosis: research frontiers in genomics, ecology, and agricultural application
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Silver age of GOLD introduces new features
… standards freely available, and enabling large-scale comparative genomics analysis initiatives. GOLD not only curates … a broad range of activities from proposal intake to publication. Information is also obtained and cross-checked … U.S. Department of Energy Joint Genome Institute …
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Finding the Fermenters
… researchers built an interactive and comprehensive database of fermentative prokaryotes. The Science Most organisms use … recently compiled a list of with more than 8,300 organisms from multiple sources, including the U.S. Department of … browser that allows other researchers to study the genomes and predict the metabolic abilities of these …
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