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A Complex Confection Decoded: Sugarcane Reference Genome
Sugarcane was the last major crop without a reference quality … world’s most harvested crop by tonnage, sugarcane accounts for 80% of global sugar production. A reference genome for … worldwide, but has one of the most complex genetic blueprints. Assembling a genome has been compared to putting …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the annotation and analysis of (meta)genomic, … (Alignment fraction, AF) have been computed for nearly 28,000 bacterial and archaeal genomes. By clustering genomes …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
A group led by JGI scientists have made strides in improving … addition to the synthetic biologist’s toolkit: a technique for  c hassis (or strain)-independent  r ecombinase- a … CRAGE to rapidly label  E. coli  in order to monitor population dynamics in co-culture. These experiments aim to …
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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  … Science A team led by researchers at the University of California, Berkeley used a multi-omics approach to reconstruct … Summary Filamentous fungi are like handymen who show up at a job site for a task that requires a flathead …
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Finding the Fermenters
Harnessing BER-funded data resources, researchers built an … the range of bacteria and archaea that rely on this form of metabolism, researchers recently compiled a list of … phenotype and genotype of fermentative prokaryotes on IMG … Publication … Datasets … Datasets … Datasets …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine … how these hosts and hitchhikers coexist is key for understanding their impact on wider ecosystems, but … views of these relationships.  Recently , researchers used population genomics to find that while archaeal hitchhikers …
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Crops as Tough as World Cup Turf
In our warming world, we’ll need corn, sorghum and other crops to … they studied just happened to be the same species that covered World Cup pitches in 2022.                     …
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Secondary Metabolites Advisory Committee
The SMAC is chartered by the Secondary Metabolites Program Head and report back to them. The … scientific relevance and quality. The Committees do not perform management functions nor do they direct the Programs’ …
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Fungal & Algal Program User Advisory Committee
The Fungal & Algal Program Advisory Committees is chartered by the Science … scientific relevance and quality. The Committee does not perform management functions nor does it direct the Programs’ …
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DNA Synthesis Science User Advisory Committee
The DNA Synthesis Science User Advisory Committee is chartered by the Program Head and … scientific relevance and quality. The Committee does not perform management functions nor do they direct the Programs’ …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … the ability to break down hardy plant cell walls and therefore hold clues to how humans could do the same on an … — and rumen microbes are no exception. Back in 2011, JGI-supported researchers published a paper in the journal …
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Informatics Advisory Committee
The IAC is chartered by the JGI Chief Informatics Officer (CIO) … on the effective management and strategic objectives for the JGI’s data science, informatics and information …
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