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Katherine Louie
Transitions in the Green Alga Chromochloris zofingiensis. Plant Cell. 2019;31: 579–601. 5. Erbilgin O, Rübel O, Louie … Rocha UN, Shi S, et al. Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly. Nat Microbiol. 2018;3: …
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Ancient Algae Reveal Secrets of Plant Evolution
Research uncovers the genetic foundations that helped plants conquer land over 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , scientists have enhanced our understanding of how early plants transitioned from water to land. Key gene groups …
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UC Merced Interns Reflect on Their JGI Summer Projects
Over the course of eight weeks this past summer, 10 students from UC Merced worked closely with … remotely due to COVID-19 restrictions, but virtual events and technology enabled a fruitful experience for … and GitHub enabled virtual collaboration. JGI also hosted events to enable students to showcase their work and even a …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… of years, underground fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, while fungi deliver … grasses, like sorghum and switchgrass. We’re optimizing systems now, so that we can get those working,” Cole said.  …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… of years, underground fungi have lived in symbiosis with plant roots. Plants provide photosynthesized carbon, while fungi deliver … grasses, like sorghum and switchgrass. We’re optimizing systems now, so that we can get those working,” Cole said.  …
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JGI Launches Latest Strategic Plan
Data Science effort (pages 37-39) and the launching of a Secondary Metabolites research group (pages 47-49). “Our hope is to …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … knowledge of viral diversity and virus-host interactions in microbial systems. Through a 2021 DOE Early Career Research Program, …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… metabolites for multiple applications The planet’s microbial diversity is immense, yet much of it remains … roles in both the carbon and nitrogen cycles, break down plant mass (think biofuels ), enhance plant health, cause … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Tanja Woyke Elected to American Academy of Microbiology
National Laboratory (Berkeley Lab), Woyke has led JGI’s Microbial Genomics Program since 2009 and heads the Single … Genomics Department Head for the Environmental Genomics and Systems Biology Division of the Lab’s Biosciences Area since … at the JGI’s 14th Annual Genomics of Energy & Environment Meeting, as well as Mircea Podar of Oak Ridge National …
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Rhizosphere and detritusphere habitats modulate expression of soil N-cycling genes during plant development
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Filling in the Plant Tree of Life
What if we understood plants and how they adapt to their ever-changing … But most available genomes are from narrow swaths of the plant tree of life. One project aims to change that. …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute … Biotechnology, which specializes in genome improvement for plants. As part of that partnership, the JGI and HudsonAlpha … led a team that  recently published work on the JGI Plant Gene Atlas in  Nucleic Acids Research . The project …
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