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Micro-Scale Applications Group
… communities using a variety of cutting-edge approaches.  Our group also seeks out new approaches that utilize … the first quantitative Stable Isotope Probing (SIP) Metagenomics pipeline that utilizes internal analytical … Stable isotope probing metagenomics …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… bacteria function and colonize diverse environments. The Science Cyclic di-GMP (Guanine Monophosphate) is found in … which affects a number of environments, including plants, soil, and the gut. To better understand the dynamics … in bacteria through work enabled by the JGI’s Community Science Program (CSP) . The Impact Cyclic di-GMP controls …
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A second special issue of Standards In Genomic Sciences from the Genomic Standards Consortium
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Mining Metagenomes for Cas Proteins
… characterized at UC Berkeley and the Innovative Genomics Institute.  The Science Researchers report the discovery of miniature … of thermostable Cas9 genes . The work also used resources at the National Energy Research Scientific Computing … of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… the shared genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers … of the  Marchantia pangenome, scientists developed a resource that associates plant’s genetic variants with specific … Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported by the Office of Science …
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Dan Rokhsar
… the JGI in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards … in the sequencing and evolutionary analysis of over fifty plant and animal genomes. He currently leads the JGI’s … Program Director, Berkeley NHGRI Training Program in Genomics and Computational Biology …
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EcoFABs: advancing microbiome science through standardized fabricated ecosystems
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Tanja Woyke
… deciphered function and host-symbiont interplay using metagenomics. Taking on a Research Scientist position in 2007, … Scientist appointment at the Bigelow Laboratory for Ocean Sciences since 2012 and an Adjunct Professor at the … specific questions regarding their proposed research are encouraged to schedule time with Tanja Woyke . Click to …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Opening doors to physical sample tracking and attribution in Earth and environmental sciences
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Bipartite graphs in systems biology and medicine: a survey of methods and applications
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A Collaboration to Improve Plant Genome Annotations Across Species
… To provide broad plant genomic capabilities, the DOE Joint Genome Institute … JGI Plant Gene Atlas is a huge updateable transcriptome resource spanning diverse plant species. It was developed to … one of which is sweet sorghum Rio from a JGI Community Science Program project and another is Lupinus albus from a …
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