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Effects of Polar Light Cycle on Microbial Food Web
… these frigid systems, where organisms higher up in the food web like fish do not exist, nutrient cycling takes place … Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Sequencing Submission Requirements for DNA Synthesis
When submitting sequences to the JGI DNA Synthesis program, please include the following …
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DOE Metrics
… hours.   FY 2024 DOE Metrics There were 2,456 unique* JGI users in FY2024 , which includes Principal Investigators … hours.   FY 2023 DOE Metrics There were 2,373 unique* JGI users in FY2023 , which includes Principal Investigators … hours.   FY 2022 DOE Metrics There were 2,243 unique* JGI users in FY2022 , which includes Principal Investigators …
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Natural Prodcast Episode 9: Roger Linington
… let me know! I’m dying to hear from you. Toss an email to  jgi[email protected] , or leave us a review on Apple Podcasts … for us to build a basic database structure and a basic web interface. And we could then show that to collaborators … structures is obviously very valuable. From my perspective, JGI has a large database of biosynthetic gene clusters and …
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Plant-Microbial Interactions Group
… 10.1371/journal.pbio.2002860 … Postdocs: Margot Bezrutczyk (JGI Postdoc) Lamprinos Frantzeskakis (JGI Postdoc) Interns: Katsuma Yonehara (Tokyo University) … of plant/environmental responses … Selected Publications … Research Team Alumni … For further details, …
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Single Cell Research Group
… 2005. This gap is also reflected in the strongly biased representation of sequenced genomes in the public domain, the … … Research Interests … Former Lab Members … Selected Publications … For further details, please reach out to the …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
The JGI Engagement Webinar held November 5, 2020 (watch the  video below, … The webinar featured  Trent Northen and Ben Bowen of the  JGI Metabolomics Program , along with Jenny Mortimer, … this is something we are considering Q (re Jenny Mortimer’s presentation):  What stressors do you think are affecting …
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Partnerships: Myco-Ed
DNA is extracted from samples, which is then sent to the JGI for genome sequencing, assembly and annotation. … The … and distribution of fungal genome datasets. It includes JGI-sequenced and publicly available datasets encompassing a …
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IMG Group
The IMG group owns and maintains integral components of JGI’s production workflow, and is responsible for the … average nucleotide identities (ANI) and fraction of orthologous genomic regions (Alignment fraction, AF) have been … speciation events within existing species. Within the JGI’s production pipeline, ANI is used to ascertain the …
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A Comparison of Microbial Genome Web Portals
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Natural Prodcast Episode 13: Francisco Barona Goméz
… thing. Another way to approach it is more related to what JGI does, which is sequence genomes. And we just published … of genetic material that exists in one copy, and it is homologous to an expansion, but it is going to be different. So, … you have a question, or want to give us feedback, tweet us @JGI or to me @danudwary. That’s D-A-N U-D-W-A-R-Y. If you …
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Synthesis
… assembly and analysis Overview of synthesis products The JGI DNA Synthesis platform enables users to validate … develop, deploy, and maintain software that support the JGI’s Synthetic Biology Program.    Representative software … and associated tools, which track samples through the JGI’s Synthetic Biology pipeline as well as provide process …
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