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The Expanding Universe of Methane Metabolisms in Archaea
Metagenome-assembled archaeal genomes provide new insights into … methane-producing archaea likely played a key role in determining the composition of the Earth’s atmosphere and … by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) representing new …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint Genome Institute works in partnership with the … Avinash: In the initial planning phase, there were about 10 groups that came together to standardize the experimental …
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The genomic landscape of molecular responses to natural drought stress in Panicum hallii
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Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network
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Axel Visel
Dr. Visel joined the DOE Joint Genome Institute in 2010. As the Deputy for Science … Laboratory and as an Adjunct Professor at the School of Natural Sciences at the University of California, Merced. …
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Making a Lichen Together
The Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) … For the first time, a team has analyzed in parallel the genomes and transcriptomes of both partners to better … by the National Science Foundation under Grant No. 1011101 to E.S. and J.M.L. … Fungus Genome on MycoCosm data …
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Data Ecosystem
To expand access to integrated data, improve tools and infrastructure as well as … analyses, such as metabolic modeling, that go well beyond genome annotation and analysis. The JGI and KBase seek to … data on scales ranging from single genes and individual genomes to metagenomes to systems-level modeling and …
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The Surprising Structure of a Shrub Willow Sex Chromosome
Laboratory and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … to M.O.). Support was also provided by the National Natural Science Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and Development Program of …
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Partnerships Development Team
Developed in 2017, the PDT was established in part to help better-connect industry to JGI resources, as … technology called chassis-independent recombinase-assisted genome engineering (CRAGE), which offers single-step genomic …
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Patterns and ecological drivers of viral communities in acid mine drainage sediments across Southern China
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Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage
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Adopt-A-Genome
In this episode, undergraduates adopt genomes that the JGI … published in the literature. These students analyze the genomes, write reports, and publish first-author papers, …
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