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Multi‐omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring
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Doubling Down on Known Protein Families
… multiple other research centers around the world. “We’ve more than doubled the number of protein families known up … unveiled microbes. Harnessing the collective power of more than 26,000 microbiome datasets, all accessible through … genomes — by at least double.  “As we keep on adding more samples, we’re getting more protein families,” Kyrpides …
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Accelerating Metagenomics Discoveries with Deep Learning
… vector representations of proteins in order to conduct more efficient protein sequence alignments. He also aims to … Sevim is part of the JGI Genome R&D Group and is one of more than 100 scientists and systems engineers involved in … Computational Resources Division (CRD), in order to create more useful tools for the bioinformatics community. Other …
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Giant Bacteria Found in Guadeloupe Mangroves Challenge Traditional Concepts
This newly discovered species of bacteria keeps its DNA more organized. “The big surprise of the project was to … (TEM) to visualize the filaments and the cell membranes in more details. These techniques allowed him to observe novel, … As Volland noted, “The bacteria contain three times more genes than most bacteria and hundreds of thousands of …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… sequences. Using this workflow, the team combed through more than 5,000 data sets of RNA sequences … Computational Sieves to Filter Sequences There are more microbes on the planet than particles in a handful of … was clear that a larger collaborative effort would be far more effective in achieving higher quality results compared …
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The Expanding Universe of Methane Metabolisms in Archaea
… an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years ago, … said first author McKay. “Now we’re adding two more: one ( Candidatus Korarchaeum cryptofilum WS) is … and the other ( Ca.  Methanodesulfokores washburnensis) is more distantly related, containing genes for both methane …
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The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses.
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Designer DNA: JGI Helps Users Blaze New Biosynthetic Pathways
The research collaboration has been incredibly productive; more than 10 papers, including two Nature Plants … to test enzymatic pathways, which make valuable products, more quickly. In the cell-free approach, cells are grown and … pathway enzymes, and thus evaluate changes to the pathway more quickly.  The JGI has also helped LanzaTech researchers …
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Learning to Look
… and refined the algorithm, the search tool combed through more than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 inovirus-like sequences compared to the 56 … them, which means we can now study their biology much more meaningfully,” Roux noted of the result. “It troubled …
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Uncovering Novel Genomes from Earth’s Microbiomes
… catalog, this work results from a collaboration involving more than 200 scientists, researchers at the U.S. Department … who had done the sampling, Eloe-Fadrosh reached out to more than 200 researchers around the world in accordance … ( Watch this IMG webinar on Metagenome Bins to learn more.) One group mined the dataset for novel secondary …
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… diversity is immense, yet much of it remains unknown. For more than a decade, researchers around the world have … The BGC Repertoire in Actinobacteria Over the years more than 3,400 genomes have been sequenced from curated … influence biochemical reactions. For this article alone, more than 600 genomes (dubbed “GEBA-Actino”) were sequenced …
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Expanding Virophage Diversity
… 10-fold through computational approaches. By mining more than 14,000 publicly available metagenomic datasets in … some of the most pressing challenges of our time. For more information, please visit  …
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