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Experimenting with EcoFABs for Student Labs - Jill Bouchard & Ying Wang
… the classroom. This episode, we visit Los Medanos Community College to see EcoFABs in action in Jill Bouchard’s BIO 21 …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… living on a changing planet. Mo Kaze is a University of California (UC), Merced graduate student working with  Susannah Tringe , JGI’s User Programs deputy and head … composition and metabolism, work on which she is expanding with her study of microbes in California’s manmade water …
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Annotated Genome Sequence of the High-Biomass-Producing Yellow-Green Alga Tribonema minus
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ContScout: sensitive detection and removal of contamination from annotated genomes
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Automated annotation of scientific texts for ML-based keyphrase extraction and validation
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Genome assembly and annotation of microalga Nannochloropsis oceanica C018.
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A scaffolded and annotated reference genome of giant kelp (Macrocystis pyrifera)
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Uncovering Novel Genomes from Earth’s Microbiomes
… leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple applications.   … of the microbial communities in the environmental samples without needing to isolate individual organisms, using … about the biology and diversity of uncultured microbes.” Teams of researchers worked on multiple analyses harnessing …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. While conducting early field … patterns of Puerto Nuevo’s coastal waters and sediment with collaborators at the Center for Scientific Research and Higher Education at Ensenada (CICESE) in her first microbial …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… relevant to living on a changing planet. Transcript for Audio Two special days occur in April: the 50th … how microbes might be influencing its health.  He sat down with me to talk about his project, and riffed a bit on what … eating are microbes.   And so that led him to come to me with the question, well, how are the microbes being affected …
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Dan Rokhsar
Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards the sequencing, annotation, and analysis of three human chromosomes. After … Training Program in Genomics and Computational Biology … Education … Selected Publications … Awards and Honors …
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Annotation and sequence diversity of transposable elements in common bean (Phaseolus vulgaris)
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