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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… Protein annotations provide insights into environmental tendencies The … Summary As described in a  recent  mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … by the Office of Science of the US Department of Energy operated under Contract No. DE-AC02-05CH11231. This research …
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CSP Large Scale Call
… The Community Science Program Large Scale call is focused on genomic science projects that address biological functions for biomanufacturing, … that are listed in the call and leverage the diversity of JGI technical and analytical capabilities. All proposals … call, a Letter of Intent (LOI) is required by the due date printed below. Proposals will be invited from those …
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Enabling pan-repository reanalysis for big data science of public metabolomics data
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Secrets of the Needles: What Microbes do on Conifer Leaves
… Novel study looks at microbiomes in aerial surfaces of plants and their roles … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … and interactions between forests and the atmosphere. The team learned that some bacterial families carry genes for …
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An Automated Tool for Assessing Virus Data Quality
… can help researchers assess virus sequence fragments and data quality. The Science Through advances in sequencing … uncultivated viruses. Following up on those guidelines, JGI researchers have now developed CheckV (pronounced … host organism. With the virus-host boundary clearly defined using functional annotation methods, it was possible to …
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Events
…  Learn about meetings the JGI is hosting:   … Viral EcoGenomics & Applications (VEGA)  … The JGI is represented at conferences year round; find out where our researchers will be presenting next. Go here to learn about upcoming user-focused webinars and workshops …
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UC Merced Interns Reflect on Their JGI Summer Projects
… past summer, 10 students from UC Merced worked closely with JGI scientists on research projects that contribute to the larger mission of the U.S. Department … wide — from implementing new data visualization tools, to using natural language processing techniques to categorize …
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Building Wet and Dry Lab Skills
… Summer 2025 marked the second year of Alabama A&M University students … grant.  Building off the previous year’s project, undergraduate interns Tamyra Long and Zyiah Mikes worked with mentors … on to Dori – a computer cluster owned and operated by the JGI and Berkeley Lab – to launch a jupyter notebook running …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… Proposals aim to sequence and annotate genomes from Antarctica to Africa to global oceans. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale … from Chris Bowler of France’s Institut de Biologie. His team proposed to sequence  Chaetoceros microalgae, or …
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Partnerships: Myco-Ed
… The Mycological Curriculum for Education and Discovery  (Myco-Ed) is a Course-Based … fungal biology teaching labs. The purpose of the program is to: train students and professors in laboratory techniques and data analyses compile original data for improving fungal …
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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing unit … high-performance computing resources, an upcoming hackathon led by the Oak Ridge Leadership Computing Facility … is a five-day coding event that offers participating teams the opportunity to either jumpstart acceleration or …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR datasets to maximize returns on … of the Microscale Applications group at the JGI, whose team uses a semi-automated, standardized process to carry … Biological and Environmental Research (BER) missions. The JGI provides integrated high-throughput sequencing and …
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