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ORT: A workflow linking genome-scale metabolic models with reactive transport codes.
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Searching for fat tails in CRISPR-Cas systems: Data analysis and mathematical modeling
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Phylogenomic structure and speciation in an emerging model: the Sphagnum magellanicum complex (Bryophyta)
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Brachypodium: 20 years as a grass biology model system; the way forward?
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Secondary Metabolites Program
…   The JGI’s Secondary Metabolites Program focuses on the exploration of … The Secondary Metabolites Program offers users extensive genomics, DNA synthesis and metabolomics capabilities to … all sequence and annotation data and their comments. … JGI researcher Dan Udwary hosts this “fireside chat”-style …
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A One-Stop Shop for Analyzing Algal Genomes
The PhycoCosm data portal allows anyone to freely investigate the genes of more than 100 algae. … greater bioeconomy. By bringing together publicly available genomic data on algae into one place, PhycoCosm allows users … complex and difficult to sequence and understand. A team of researchers led by Algal Genomics Program lead Igor …
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Large‐scale maps of variable infection efficiencies in aquatic Bacteroidetes phage‐host model systems
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Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus
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Tracking the ancestry of known and ‘ghost’ homeologous subgenomes in model grass Brachypodium polyploids
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Metabolic model predictions enable targeted microbiome manipulation through precision prebiotics.
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Translating macroecological models to predict microbial establishment probability in an agricultural inoculant introduction
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Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
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