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JGIota: A Tool to Find the Nomadic Genes that Help Microbes Adapt - geNomad
… software that finds plasmids and viruses within microbial genomes. As mobile genetic elements like viruses spread their DNA, they can affect how microbes cycle nutrients and adapt to climate change. …
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Webinar: PhycoCosm Tutorial
… data portal , an interactive collection of sequenced algal genomes, omics data and comparative analysis tools. … it is based on 3.  Q(uestion): Can you please explain again how did you pick genomes to be on the genomes portal? For … to do manual annotation – not covered in these tutorials 6.  Q: On the genome synteny page, would it be possible to …
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A More Intuitive Phytozome Interface
… version of the JGI’s plant data portal. On August 6, 2021,  version 12 of Phytozome will be retired, and  … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … at  https://phytozome-next.jgi.doe.gov/jbrowse/index.html How can I access the genome data that was formerly at …
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Exploring the roles of microbes in facilitating plant adaptation to climate change
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Microbiome Data Science Team
… Biology is currently experiencing a revolution brought on by rapid developments in genomics and other omics technologies.  The exponential growth of DNA sequencing data, coupled with recent computational technology … 2014), unearthing hundreds of thousands of new viral genomes and their predicted hosts (Nature 2016, Science …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… New studies show methanogenesis is not exclusively for Euryarchaeota. … enabled by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … is not limited to  Euryarchaeota .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to …
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Tracking the Origins of Methane-Producing Microbes
… Mini-Metagenomics Approach Helps Identify Novel Archaeal … Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … applied mini-metagenomics to these samples by sorting the microbes into small pools of cells that were then sequenced …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant bioenergy … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and …
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Genomic variation within the maize stiff‐stalk heterotic germplasm pool
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Improving the Cacao Genome and Phytozome
… Global chocolate brands can’t exist without cocoa According to the  International … (ICCO), global cocoa bean production in 2017-2018  was 4.6 million metric tons . The global chocolate brands couldn’t … will be cocoa for chocolate tomorrow In 2010, a draft first genome of  Theobroma cacao  – the tree that produces cacao …
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Insights into the Maize Pan-Genome and Pan-Transcriptome
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RECAP: Keynote Speakers Talk Innovation at 2022 JGI Annual Meeting
… who discussed her work on transposable elements and how understanding these genes has helped pave the way for the conception of a pangenome. Recordings and recaps of all three keynote talks … of livestock. Currently, adjusting the diet of animals can help to lower greenhouse gas emissions, however, it’s …
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