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From Competition to Cooperation
… lineages. The Science By comparing 135 fungal sequenced genomes, researchers were able to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently evolved to … genomes of symbiotic species available: 73 saprotrophs and 62 mycorrhizal species. The 62 mycorrhizal species include …
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DOE Metrics
… 2025 Total 700.0     8,585     Q1 2025 175 190.304 109% 2,164 2,136 98.7% Q2 2025 175 152.100 87% 2,117 2,112 99.8% Q3 … Goal = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† … developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress …
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JGIota: Looking Back at Methane-Making Microbes
We count on livestock for food and fiber, but raising these animals also produces an atmosphere-warming gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea breaking down plant …
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A Plant Root Atlas for Tracking Developmental Trajectories
… that could help researchers track cell development and how they determine identity, as well as the roles played by … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … . Dev Cell. 2022 Feb 28. S1534-5807(22)00033-8.doi: 10.1016/j.devcel.2022.01.008 Relevant Links: Single-Cell Data …
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Dan Rokhsar
Dr. Rokhsar joined the DOE Joint Genome Institute in 2000 as the founding Associate Director … (2010-2019), and JGI Chief Informatics Officer (2013-2016). Dr. Rokhsar joined the faculty of University of … on understanding the origin, evolution, and diversity of plants and animals by combining computational genome …
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Microbial co-habitation and lateral gene transfer: what transposases can tell us
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Ian Blaby
Since 2019 Dr. Blaby heads the DNA synthesis platform at the Joint Genome Institute, where he leads three groups focused on HTP … metabolism in cyanobacteria Nature Communications 15(1) 3167. 2024 Simirenko et al ., gRNA-SeqRET: a universal tool …
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A Grass Model to Help Improve Giant Miscanthus
… of polyploidy and perenniality. The Science A reference genome sequence and genomic toolkit for the perennial grass  … Analysis of the genome sequence also provides insights into how the multiple chromosomes of  Miscanthus arose by ancient … was supported by EU FP7 KBBE.2011.3.1-02, grant number 289461 (GrassMargins) and the DOE Office of Science, Office of …
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An Integrated Dataset to Understand Ecosystem Interaction
… microbial partners. The Science To help better understand how ecosystems work and how healthy they are, a recent data … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … back to the first complete genome of a poplar tree in 2006. … This research was sponsored by the U.S. Department of …
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Astrovirology: how viruses enhance our understanding of life in the Universe
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Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
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Alabama Agricultural & Mechanical University Internship Program
… 2024 was a year of first, including the flagship internship program between Alabama Agricultural & Mechanical University and the Joint Genome Institute. AAMU students spent two months in …
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