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User Support Analysis Group
… for diverse experiment types, with main focus areas being genome variation, transcriptomics and epigenomics. Our work varies in scope from the development of highly customized analysis workflows …
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JGI Scientists Pen Genome Watch Articles
Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … published January 27, is about engineering plants and their microbiomes for more sustainable agriculture and was written … leads the  Microbial Program at the JGI, received a message from Andrea Du Toit, senior editor for  Nature Reviews …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department of … investigated Chromosome 16, which contains about 3% of the human genome. They wanted to learn about the genes … years. The DOE brought together the people and resources from these three national labs to form the DOE Joint Genome …
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Entities inside one another ‐ a matryoshka doll in biology?
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A roadmap for research on crassulacean acid metabolism (CAM) to enhance sustainable food and bioenergy production in a hotter, drier world
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Genome-wide characterization of methylguanosine-capped and polyadenylated small RNAs in the rice blast fungus Magnaporthe oryzae
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Nikos Kyrpides
Dr. Kyrpides joined the DOE Joint Genome Institute in 2004 to lead the Genome Biology Program … University of Crete, Greece … Pavlopoulos GA et al. (2023) Unraveling the functional dark matter through global … Nayfach S, et al. (2021) A genomic catalog of Earth’s microbiomes. Nature Biotechnol . 39(4):499-509 Danko D, et …
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FICUS-NERSC/KBASE
The mission of the Joint Genome Institute is to serve the scientific community as a … and readiness to begin work, checking such factors as genome size, polymorphism level, sample quality and … The ranked proposal list, along with a recommendation from management at JGI and the other participating …
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You Can Move, But You Can’t Hide
… entities that seek to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are … Lead Nikos Kyrpides at the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at … of Energy Joint Genome Institute (https://ror.org/04xm1d337), and the National Energy Research Scientific Computing …
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Doubling Down on Known Protein Families
… big the room is.  A new study  published online Oct. 11, 2023 in  Nature highlights the vast array of functional … of scientists at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … the publicly available  Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the …
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Nigel Mouncey
Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … for Industrial Microbiology and Biotechnology in 2022-2023. … Nigel Mouncey is the Secondary Metabolites Program head … 100213Nayfach S et al. 2021. A genomic catalog of Earth’s microbiomes. Nat Biotechnol. 39:499-509 Hurley A et al. …
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational … data with existing bioinformatic methods to bridge the gap from sequence to biology. …
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