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Extreme Scale De Novo Metagenome Assembly
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Frederik Schulz
Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of … eukaryotic microbes and viruses in environmental sequence data. Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine …
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Making a Lichen Together
Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) participants. One … them to close relatives who don’t engage in the lichen lifestyle. The team’s results appear in  BMC Genomics . To … autonomy; they can be isolated and grown separately from each other. A possible explanation, according to the …
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Synthetic Biology Lab
The Synthetic Biology lab is divided into a DNA synthesis production group and a synthetic biology applications group. The DNA synthesis and assembly group: Our … on developing methods for converting digital information from sequence databases into biotechnological or …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or … are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of the … Horonobe Underground Research Laboratory, Hokkaido, Japan. From samples of both environments, they used fluorescence  …
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The Expanding Universe of Methane Metabolisms in Archaea
… a key role in determining the composition of the Earth’s atmosphere and regulating the global climate for life to flourish. For Guillaume Borrel and Simonetta … provided by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) …
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Jane Grimwood Named HudsonAlpha Genomics Chair
Congratulations to Jane Grimwood, who has been appointed the Loretta Purdy … sequence of the complex switchgrass genome , using samples from common gardens growing across the country. The national … improvements to switchgrass through more targeted genome editing techniques. A 2020 Nature Biotechnology paper on the …
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Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of … But some viruses are also able to play a long game. In a lifestyle called lysogeny, they can insinuate themselves … their host indefinitely. Now, in studying a microbial mat from Cone Pool in Mono County, California, scientists have …
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Community Science Program
Science Program (CSP) provides the scientific community at large with access to high-throughput sequencing, synthesis, and metabolomics … aims to advance genome science-based scientific research from a broad range of disciplines. Three calls fall under …
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Len Pennacchio
DOE Joint Genome Institute and has focused on applying state-of-the-art molecular methods to address wide-ranging questions existing in biology. He … at UC Berkeley. Dr. Pennacchio received his Ph.D in 1998 from the Department of Genetics at Stanford University where …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… more broadly, land plant evolution. Recent findings in Ceratopteris richardii show a long history of dynamic evolution … gene duplications, and even more ancient gene transfers from bacteria have all armed the plant with an array of … for bioremediation, new agricultural applications or life-saving drugs. A better understanding of its genetic …
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