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JGI@25: Following Fungi that Pry Apart Plant Polymers
… 2022 marks the JGI’s 25th anniversary. Over the last year, we’ve been revisiting a number of notable achievements … any kind of biomass breakdown. They’ve spent millions of years evolving tactics against potential threats. “Because … team leveraged transcriptomics and other assays to identify and test carbohydrate-active enzymes. They found many …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome … – were selected to continue their research over the school year.   …
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Introducing New Members of the JGI User Executive Committee
… been an active user of the JGI at any time in the past two fiscal years is eligible for election to the UEC. Members serve three-year terms and can serve no more than two consecutive terms. …
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Dealing with Drought: Uncovering Sorghum’s Secrets
… Control of Drought Response in Sorghum (EPICON) is a five-year, multi-institution project funded by the DOE Office of … impact the crop and its microbiome. For three consecutive years (2016-2018), researchers conducted large-scale … of the National Academy of Science the week of December 2, 2019. While sorghum is drought-tolerant, the crop’s precise …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
… “Being a JGI-UC Merced Intern during the summer of my first year as a Ph.D. student significantly, and positively, …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… may be akin to finding a single snowflake on a colored-in page of that book. Published online September 28, 2022, in … work resulted from a three-way collaboration that began in 2019, recalled Uri Neri of Tel Aviv University, one of the … viruses is just the beginning. “I often say that just identifying a sequence as viral is not even half the story.” Neri …
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Simon Roux
… the development of novel computational tools to identify virus sequences, the design of new experimental … For this role, Dr. Roux can rely on more than 10 years of expertise in the fields of virus ecology and virus … genomes. Nature biotechnology 39, 578-585. Roux et al., 2019. Cryptic inoviruses revealed as pervasive in bacteria …
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JGI@25: From Life at the Extremes to Editing Genomes
… other enzymes in the CRISPR-Cas system. For the past few years they have partnered with JGI’s Microbiome Data Science … in a Two-Protein-type V-C CRISPR System. Mol Cell. 2019 Feb 21;73(4):727-737.e3. doi: … enzymes. Science. 2018 Nov 16;362(6416):839-842. doi: 10.1126/science.aav4294. Harrington LB et al. A thermostable …
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Emiley Eloe-Fadrosh
… from host-associated and environmental samples to identify and characterize genomic information from uncultivated … science. Rev. Microbiol. 18:313-314. Roux S, et al. 2019. Cryptic inoviruses are pervasive in bacteria and … biomes. Nature Microbiol. 4: 1895-1906. Roux S, et al. 2019. Minimum information about an uncultivated virus genome …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… it yourself  here .) She translated her abstract from a 2019 conference. Both versions appear side-by-side below: …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… distinguish males and females even when plants with multi-year generation times are young and haven’t physically … National Natural Science Foundation of China (31590821, 31561123001, 31500502, 41871044), National Key Research and … and the National Key Project for Basic Research (2012CB114504). The work conducted by the U.S. Department of Energy …
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Products
… Program Product Description Deliverables Cycle Time FY25 Q1  (median/75th percentile*) DNA Synthesis Constructs … change etc) and structural rearrangements, alignment files 114/114 Microbial Transcriptome RNA for expression profiling …
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