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Camargo AP. et al. (2023) Identification of mobile genetic elements with geNomad. Nat Biotechnol . Epub. Neri U. et al. …

… model fungus  Neurospora crassa . The Science A team led by researchers at the University of California, Berkeley … to reconstruct and model gene regulatory pathways used by the filamentous fungus  Neurospora crassa, and to … Program through a proposal akin to the Encyclopedia of DNA Elements (ENCODE) project, which is aimed at determining the …

The battle waged below the Earth’s surface is reconstructed by combining a study of microbial communities (metagenomics) … CRISPR systems, which help bacteria resist foreign genetic elements by incorporating short sequences from infecting viruses and …

… little makers rely on to survive. Now, new research enabled by the U.S. Department of Energy (DOE) Joint Genome … .  Finding Methane-Making Microbes with Metagenomics  By leveraging metagenomics to sample the entirety of a … than historically presumed — widening the avenues for exploring methane as a source of bioenergy, better …

On the UEC she intends to represent the user community by providing input on JGI policies and capabilities that … marine flowering plants, and their microbiomes. She is exploring the seagrass rhizosphere in her ongoing CSP New … analysis, as well as how they can be shared with and used by students. Solomon  is an associate professor at the …

… of the National Academy of Sciences bridges this gap, by tracing the evolution of a specific enzyme family called … ways other enzymes are not.  “It turns out that all of life created the minimum set of ATs that act together to create … replaced other ATs in different species, seemingly driven by the functional versatility of ATs. This replacement has …

… research is very sentimental to me.” Mentors: Crysten Blaby-Haas & Bikash Shrestha Project: “ Detecting Isotope Bonds … that work here.” Mentor: Lorenzo Aureli Project: “ Exploring the epigenetic basis of pathogenicity in bacteria” … Project: “ Improving biosynthetic gene cluster annotation by leveraging a large genomic model ” Leonel Gonzalez : …

… warmer waters, including the tropics, tend to be dominated by prokaryotes (microorganisms without a defined nucleus). … Communications , warmer waters and communities dominated by prokaryotes could replace those of eukaryotes much more … on the study — a collaboration of eight institutions led by UEA and including the U.S. Department of Energy (DOE) …

… for improved growth rate and growth yield on glucose by elimination of gluconate formation. Appl Environ …

… the biogeochemical cycling of carbon, nitrogen, and other elements, better understanding the predator-prey dynamics in … This work,  recently published in  The ISME Journal , by contrast, relied on methods that eschew culturing, … single-cell and metagenomic sequencing. A team co-led by Mária Džunková, postdoctoral researcher at the U.S. …

… know existed before. Name: Deepika Gunasekaran Class Year: 2nd year graduate student in Quantitative and Systems …