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Fungal Friends or Foes in Plant Roots
… health and diversity, which can in turn boost yields for both food and for candidate bioenergy feedstock crops. Summary A plant is like an office building, its roots are akin to the ground … mycobiome were predicted to evolve from ancestors that were likely harmful to plants and can efficiently colonize roots …
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Advances on genomics, biology, ecology and evolution of Brachypodium, a bridging model grass system for cereals and biofuel grasses
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Fine Mapping of the Bsr1 Barley Stripe Mosaic Virus Resistance Gene in the Model Grass Brachypodium distachyon
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Microbial Community Analyses Inform Geochemical Reaction Network Models for Predicting Pathways of Greenhouse Gas Production
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An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies
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PEATmoss (Physcomitrella Expression Atlas Tool): a unified gene expression atlas for the model plant Physcomitrella patens
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Chemical, ultrastructural and supramolecular analysis of tension wood in Populus tremula x alba as a model substrate for reduced recalcitrance
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Genome‐wide scans of selection highlight the impact of biotic and abiotic constraints in natural populations of the model grass Brachypodium distachyon
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Streamlining Regulon Identification in Bacteria
… regulation is critical to ensuring genes vital for growth and survival across various environments are … complex as well as a sigma factor. While all bacteria encode at least one principal sigma factor responsible for … transcription of gene sets associated with functions like stress responses and cellular differentiation. The …
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When “The Blob” Made It Hotter Under the Water
Data from marine heatwave event may foreshadow climate change impact on marine microbial … and after The Blob, researchers developed a preliminary model of how marine microbial communities are affected by … microbial populations to cluster along the water column, like layers in a cake. Additionally, as nutrients became …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… in various shades of white. To researchers searching for sequences of RNA viruses in large data sets, their work … cycles. While most organism’s genetic information is encoded in DNA, with RNA delivering the instructions inside … computational sieves to filter out sequences that were unlikely to contain the RdRP sequence. The work resulted from …
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iPHoP: A Matchmaker for Phages and their Hosts
… be a specific host the virus has adapted to commandeer. For bacteriophage viruses, these hosts are microbes like bacteria, not humans. With metagenomic sequencing, … into the same workflow, then uses a machine-learning model to give its integrated prediction a confidence score. …
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