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David Goodstein
… joining the JGI in 2002. Initially focused on building tools to facilitate expert curation of human gene models in … Project, he began developing larger comparative genomic systems as the JGI’s eukaryote research efforts expanded to … responsible for genome annotation, comparative analysis and data distribution for the JGI's direct collaborators and the …
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Natural Prodcast Episode 1: The Primer, Part 1
… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s “Natural Prodcast,” a podcast about the … so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify … and to do research to get a better understanding of that data. ALISON: Awesome. So tell me why should I even care …
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Natural Prodcast Episode 17: Cassandra Quave
… early stage drug discovery in general, and a possible data-driven future for plant natural products. Happy … get a DNA sequence first. And there are plenty of software tools to find natural product gene clusters, and even be … identifying their roles within these complex communication systems across kingdoms of life. ALISON TAKEMURA: OK. This …
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MycoCosm portal: gearing up for 1000 fungal genomes
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Socotra Island the forgotten fragment of Gondwana: Unmasking chameleon lizard history with complete mitochondrial genomic data
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Next generation sequencing and bioinformatic bottlenecks: the current state of metagenomic data analysis
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SoyCSN: Soybean context‐specific network analysis and prediction based on tissue‐specific transcriptome data
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The Physcomitrella patens gene atlas project: large‐scale RNA‐seq based expression data
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Statistical analysis of feature-based molecular networking results from non-targeted metabolomics data
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, … D are available for comparative analysis on JGI’s plant data portal  Phytozome , which is a community repository and … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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DOE Metrics
… developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress … capabilities to analyze complex genomic or metagenomic datasets. [Download PDF] Q3 – Report on new computational approaches for the annotation of genomic data. [Download PDF] Q4 – Report on a new computational …
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An Integrated Dataset to Understand Ecosystem Interaction
Research yields a comprehensive tree and soil dataset for understanding the dynamic relationship between … partners. The Science To help better understand how ecosystems work and how healthy they are, a recent data set  … were provided by the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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