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Lead position in 2009 and assumed the Deputy Director of User Program position in 2021. In addition to her JGI … Merced's School of Natural Sciences since 2015. Prospective users with specific questions regarding their proposed … J (Senior Editor 2016-2021), Peer J (2015-2019), Scientific Data (2017-2019). Reviewer for major journals and funding …

… recently selected as the 2025 recipient of the Microbiome Data Prize by the American Society for Microbiology (ASM). … the virus and plasmid workflows for the National Microbiome Data Collaborative.  This award recognizes distinguished research achievements that support open data practices, development of standards and processes for …

… — JGI researchers and collaborators work to create FAIR datasets to maximize returns on these advances. Over the … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … genome-resolved metagenomes and will be implementing new tools in KBase to tackle the bioinformatic challenges …

Genomics (formerly DNA Synthesis) call, and he noted the data had driven his lab’s focus on guide RNA library generation and development and its … or through the  “Facilities Integrating Collaborations for User Science” (FICUS) initiative .  Q: What is the …

… genomes in progress and 200 that are pending samples from users. Roughly 300 have been published. Spatafora said the … on Phytozome  … Filling in the Plant Tree of Life … Fungal Dataset … Plant Datasets … Genome Insider …

… eukaryotic microbes and viruses in environmental sequence data. We use multi-omics (metagenomics, metatranscriptomics, …

… of the JGI’s Genomic Technologies department is   ensuring users have access to cutting-edge capabilities to help advance their science by generating data in three overarching categories: Sequencing, Synthesis …

… research has been focused on semantic and object-oriented data modeling, and biological data management. She was one … of the Object-Protocol Model (OPM) data management tools for scientific applications developed at Berkeley Lab. … K, Ratner A, Huang J, Huntemann M, Hajek P, Ritter SJ, Webb C et al. The IMG/M data management and analysis system …

… analysis and interpretation of genomic and metagenomic data for JGI’s user community. She also provides support for user science … through implementation of advanced analysis pipelines and tools as well as development and implementation of …