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… and produced the reference genomes that allowed for mapping these RNA reads. “Currently, this is the largest … gene expression to functions and fungal species. Initially, mapping RNA sequences this way was challenging, according to … said, the 1000 Fungal Genomes project, together with other CSP projects, had sequenced over 2,000 fungal genomes. The …

… proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as … he said. “We thought about reconstructing gene regulatory networks, understanding where transcription factors bind in … of the project is understanding what TFs and regulatory networks are conserved across fungi.” Using multiDAP-seq, …

… One way of detecting giant viruses in sequence data is read-mapping: using giant virus reference genomes to search for … productive approach for giant virus genomic discovery.  In 2020, a JGI-led team used this approach to deliver novel … Research Council (ERC) under the European Union’s Horizon 2020 Research and Innovation Programme (grant agreement no. …