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JGI Hosts GPU Hackathon in May
… WHEN: May 6-10, 2019 WHERE: JGI With DOE investments in graphical processing … is organizing nearly a dozen hackathons around the world in 2019, only the JGI hackathon is particularly focused on … code to a new architecture. Proposals are due March 1, 2019 for the JGI hackathon, set for May 6-10, 2019, in …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… applied to samples collected from acidic iron-oxide microbial mats in Yellowstone National Park over time, … role in the development of life on Earth; the iron-oxide microbial mats at Yellowstone offer researchers an analog … Inskeep of Montana State University has been conducting microbial field studies at Yellowstone, and in this latest …
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Maureen Berg
… that viruses play in their ecosystems, particularly in freshwater ecosystems. …
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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JGI Announces 2026 New Investigator Portfolio
… metatranscriptomics and genome assembly to investigate microbial and plant metabolism across diverse ecosystems — … soils and Icelandic hydrothermal systems to coastal wetlands and permafrost. Their work advances genomic … including biological routes for critical minerals recovery, microbial pathways for high-value bioproducts, and …
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Ecophysiology of Freshwater Verrucomicrobia Inferred from Metagenome-Assembled Genomes
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Diversity, distribution, and expression of opsin genes in freshwater lakes
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Two decades of bacterial ecology and evolution in a freshwater lake
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Matthew Kellom
… Matt is broadly interested in the interactions between microbial life and environment, and using metagenomics to study these complex natural systems. Microbial communities living in hard-to-reach places that … are of particular interest. Matt also supports various CSP and FICUS user projects for the Metagenome Program. …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… team has comprehensively described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms live among … with their host indefinitely. Now, in studying a microbial mat from Cone Pool in Mono County, California, …
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How Maize Makes An Antibiotic Cocktail
… corn variety and protect maize by fending off fungal and microbial infections. Scientists had assumed that maize … Science Program . And the work is part of a  larger CSP Functional Genomics proposal to understand terpene  … a DOE Joint Genome Institute Community Science Program (JGI-CSP) grant (CSP2568 to P.Z., ES and AH), and by a …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… available through the  Community Science Program (CSP) . This includes mass spectrometry-based measurements of … Metabolite Annotation and Gene Integration . ACS Chem Biol. 2019 Apr 19;14(4):704-714. doi: 10.1021/acschembio.8b01107. … Q:  Any advice on normalizing metabolomic data from a whole microbial community, without having cell counts or …
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