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Special Initiatives & Programs
… Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for BERSS support through the JGI (with the exceptions of DE-FOA-0003453 and DE-FOA-0003615 , which are both … 10 Tbp sequencing, 500 kbp synthesis, and 200 polar/500 nonpolar metabolomics samples, and should generally conform …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On August 6, 2021,  … website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … possible given the finite staff available to the Phytozome project. What will happen to Phytozome v12 URLs after August …
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A Grass Model to Help Improve Giant Miscanthus
… chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the dynamics of gene … Understanding the evolution of polyploidy, and how genomes respond to extra chromosome and gene copies, will … Miscanthus breeding programs. The team also sequenced genomes of numerous wild Miscanthus lineages to better …
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The More the Merrier: Making the Case for Plant Pan-genomes
… Brachypodium model system traces polyploid genome evolution. Flowering plants abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids with two … flowering plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose …
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Data Ecosystem
… users through a BER data ecosystem.  A data ecosystem is a connected resource where data from different organizations is discoverable and accessible. Linking the resources of powerful institutions like the JGI, KBase, NCBI, NMDC, EMSL and the Protein … specifically optimized for high-performance computing environments. …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science … hallii (Hall’s panicgrass), by generating two complete genomes from varieties that diverged over a million years ago. The hallii variety thrives in desert … The work conducted by the US Department of Energy Joint Genome …
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Natural Prodcast Episode 21: Elizabeth Parkinson
… it. I’m keeping to my schedule. This should be coming out on the first Thursday of the month, just like I promised. … pathways, which led her to a successfully funded JGI CSP project. And we also got to talk about work at her … in is actually seeing whether we could go into the genomes and predict what the natural product might actually …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… single drop of water could outnumber a small city’s population, the number of viruses in the same drop—the vast majority … and genome size from small, to large and even giant. The genomes of giant viruses are on the order of 100 times the … what has typically been associated with viruses, while the genomes of large viruses may be only 10 times larger. And …
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Single Cell Research Group
… Research in the Woyke laboratory focuses on the utility of single-cell methods to access genetic material of uncultivated taxa of interest. One such effort is targeted at environmental cells that are from candidate phyla, major branches … in the strongly biased representation of sequenced genomes in the public domain, the bulk of which belong to …
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Adopt-A-Genome
… In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the … (California State San Marcos) about how the Adopt-A-Genome project got started. Plus, Kalyani Maitra (California State Fresno) and two students, Angela and Mark Soghomonian share what it was like to take on one of these …
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The Evolution of Host Specialization in the Vertebrate Gut Symbiont Lactobacillus reuteri
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Natural Prodcast Episode 9: Roger Linington
… back for episode 9 of Natural Prodcast. This week, Alison and I talk to Roger Linington, from Simon Fraser … and doing medicinal chemistry, doing development of projects on a project-by-project basis. And the more time has gone on, the … This episode features our conversation with Roger Linington , from Simon Fraser …
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