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Help from Citrus’ Bitter, Hardier Cousin
… The chromosome-scale genome sequence of trifoliate orange yields clues to … groves: citrus greening. From 2012 to 2016, in Florida alone this disease caused an estimated $4 billion in losses. … (Berkeley Lab), played a critical role in assembling, annotating and analyzing the genome in order to find the …
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Special Initiatives & Programs
… of Science Early Career Research Program .   If “BERSS” is not mentioned in the BER funding call, proposals are NOT eligible for … sequencing, synthesis, or metabolomics should apply to one of the JGI’s  calls for user proposals . … science.  Projects include de novo generation of genome data, assistance in interpreting and/or building on …
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A More Intuitive Phytozome Interface
… as an interactive website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  … foundation for Phytozome v10) back in 2014.  Several components of that codebase are no longer supported, and there … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility …
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The Sorghum bicolor reference genome: improved assembly, gene annotations, a transcriptome atlas, and signatures of genome organization
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Mapping the Earth’s Hidden Fungal Kingdom
… Researchers with the Department of Energy (DOE) Joint Genome Institute (JGI)’s Fungal and Algal Science Program … forefront of tackling this enormous challenge, assembling one of the world's most comprehensive collections of fungal … researchers worldwide. As the JGI scales toward 10,000 annotated genomes, this infrastructure advantage becomes even …
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JGI@25: Using Team Science to Build Communities Around Data
… (Graphic: Neil Byers) The JGI launched the 1000 Fungal Genomes (1KFG) Project through a 2012 Community Science … the effort to sequence 1000 fungal genomes to create two reference genomes for all fungi families — essentially, the … with at least two genomes, and another 190 families with one. There are another 100 genomes in progress and 200 that …
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Frequently Asked Questions: Project Management
… before work on your proposal may begin.  You will be notified by your project manager in the initial … by investigators in the past.  These protocols are not endorsed by and have not been validated by the JGI, but are provided as general … in the Sequencing Sample Overview file in our HERE (TK) .  Note: the JGI does not recommend shipping a dry/lyophilized …
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FICUS-NERSC/KBASE
… The mission of the Joint Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the most relevant … Proposals submitted to the JGI-NERSC-KBase call do not use the Letter of Intent; rather proposals are submitted …
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JGI Scientists Pen Genome Watch Articles
… Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … Emiley Eloe-Fadrosh ,  Metagenome Program lead, shone a spotlight on  ammonia oxidizing archaea and what we’re … to (meta)genomics, and at least one of the papers they reference should be hot off the press. She tells prospective …
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User Support
… interface. To submit a proposal, users must first log in (Note: new users of the JGI will need to register and create … needed Users are notified as projects reach specific milestones, either by automated emails or emails from your Project … of your sequencing project at any time by logging on to the Genome Portals using your JGI login. After …
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Changes in ambient temperature are the prevailing cue in determining Brachypodium distachyon diurnal gene regulation
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Regulation of hair cell and stomatal size by a hair cell-specific peroxidase in the grass Brachypodium distachyo n
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