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MaxBin: an automated binning method to recover individual genomes from metagenomes using an expectation-maximization algorithm
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Len Pennacchio
In 2003, Dr. Pennacchio joined the DOE Joint Genome Institute and has focused on applying … joint appointments as a Deputy Director at the DOE Joint Genome Institute, Senior Scientist at Lawrence Berkeley … Program Defining the vast landscape of gene regulatory sequences in the human genome. Understanding how variation …
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Metagenomic Sequencing of an In Vitro-Simulated Microbial Community
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DOE Metrics
… = 91 days; Actual Operation = 24 days due to significant sequencer downtime related to the shelter-in-place. ††† … Q1 – Report on new computational developments for improving microbial, metagenomic, or plant genome assemblies. [Download PDF] Q2 – Report on progress …
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Automated annotation of scientific texts for ML-based keyphrase extraction and validation
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… help solve energy and environmental challenges.   The Human Genome Project began in 1990 when the U.S. Department of … studying Chromosome 5, which contains about 6% of the human genome . They discovered genes linked to conditions such as … Center, JGI staff worked around the clock to generate the sequences of these three chromosomes. In 2004, they …
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Picking Up Threads of Cotton Genomics
Analysis reveals cotton genome stability across global lineages . Come harvest time, … darwinii are the others. All of these cotton lineages have genomes approximately 2.3 billion bases or Gigabases (Gb) in … Berkeley National Laboratory (Berkeley Lab) has now sequenced and assembled the genomes of these five cotton …
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Tanja Woyke
Woyke pursued her postdoctoral research at the DOE Joint Genome Institute in 2004. The main object of her research … primary interest and passion. Dr. Woyke stepped into the Microbial Genomics Program Lead position in 2009 and assumed … with Tanja Woyke .  Click to schedule … Tanja Woyke is the Microbial Science Program Head as well as our Deputy of User …
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Complete genome sequence of Paludibacter propionicigenes type strain (WB4T)
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JGI Scientists Pen Genome Watch Articles
Researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … with an email in 2018.  Tanja Woyke , who leads the  Microbial Program at the JGI, received a message from Andrea … Institute in the UK — a nonprofit that was founded to help sequence the human genome. Today, the Sanger Institute …
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Metabolomics
… this identification, metabolomics enables functional genome annotation, improves understanding of the role small …
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Nigel Mouncey
Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth Director in its … biology. Dr. Mouncey has a long-standing interest in microbial genetics that started with his education and … to build and position JGI as a leading integrative genome science user facility. In addition to serving as JGI …
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