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Host-specific and tissue-dependent orchestration of microbiome community structure in traditional rice paddy ecosystems
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Draft Genome Sequences of Two Gammaproteobacterial Methanotrophs Isolated from Rice Ecosystems
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Multiple sources of aerobic methane production in aquatic ecosystems include bacterial photosynthesis
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From Competition to Cooperation
… to carry out a broader analysis than had ever been done before to look at how multiple forest fungi have independently … evolved to establish symbiotic relationships with plants (mycorrhizae), and particularly how fungi that feed on … such as nutrient transporters, were co-opted into symbiotic functions. Recently published in  Nature Communications , …
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Brachypodium distachyon and Setaria viridis: Model Genetic Systems for the Grasses.
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Genome-scale model development and genomic sequencing of the oleaginous clade Lipomyces
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The diatom Fragilariopsis cylindrus: A model alga to understand cold‐adapted life
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EcoBOT: an AI/ML enabled automated phenotyping capability for model plants
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics program. Prior to this, he served as a Research Molecular Biologist at the USDA for 12 years where he was a driving force behind the … adoption of Brachypodium distachyon as an experimental model for the grasses. In addition to this fundamental work, …
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Viral and metabolic controls on high rates of microbial sulfur and carbon cycling in wetland ecosystems
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The YNP Metagenome Project: Environmental Parameters Responsible for Microbial Distribution in the Yellowstone Geothermal Ecosystem
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Ecological Assembly Processes Are Coordinated between Bacterial and Viral Communities in Fractured Shale Ecosystems
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