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Tanja Woyke
… assumed the Deputy Director of User Program position in 2021. In addition to her JGI appointment, she also holds an … at the Bigelow Laboratory for Ocean Sciences since 2012 and an Adjunct Associate Professor at the University of California, Merced's School of Natural Sciences since 2015. Prospective users with specific questions regarding …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, JGI’s Zhong Wang and Science Programs Deputy Axel Visel … fellowship Sabah Ul-Hasan (2015 graduate intern): In her final year in the Quantitative & Systems Biology PhD program …
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Better Genome Editing for Bioenergy
… and choose only the most reliable sgRNAs for their final set. Tool in hand, the team was ready to test what … genes were essential to  Y. lipolytica . They identified 1,377, or 17.5 percent, of  Y. lipolytica ’s genes to be required for …
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Mindfully Moving JGI
… to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in Building 100 were silent. Twenty years after the JGI united the … to mindfully declutter. Earlier this year, the third and final annual cleanup day filled nearly 24 speedpaks, and …
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Shattering Expectations: Novel Seed Dispersal Gene Found in Green Millet
… led the team to identify a gene called Less Shattering 1 (SvLes1); gene editing studies led by co-first author Pu Huang … green millet plant genomes were generated, though the final analyses focused on 598 individuals. Schmutz and his …
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SPRUCE-ing Up Science
When Lawrence embarked on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand into … cohort is required to participate in both a midterm and a final round of presentations.  “That really helped build my … his PhD dissertation defense presentations and beyond. In 2018, a friend of his wife’s passed along an open postdoc …
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Fungus Fuels Tree Growth
… and without an inoculation of the  M. elongata strain PM193 added to a diluted soil mixture, publishing  the results … Interactions . The results were striking. Adding PM193 caused poplar cuttings to grow about 30 percent larger by dry weight than without PM193  . By contrast, using a different endophytic fungus,  …
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Frederik Schulz
Frederik Schulz joined the DOE Joint Genome Institute in 2016 and is leading the New Lineages of Life Group. His … University of Vienna (Austria) … Krinos et al. 2024. Time-series metagenomics reveals changing protistan … metagenomics. Nature Reviews Microbiology 20: 721 Volland, J.-M. et al. 2022. A centimeter-long bacterium at …
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JGI Portals
… and analytical tools for all JGI sequencing projects. In 2021, the JGI launched the Data Portal to eventually replace … metagenomes, and metatranscriptomes. It features over 15 million viral genomes and fragments, enriched with …
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Yasuo Yoshikuni
… has been head of the DNA Synthesis Science Program since 2015. The mission of this program is to harness the power of … efficient than glycolysis., Nature Chemical Biology , 2024 Dubinkina et al., A transcriptomic atlas of acute … in bacteria, Cell Chemical Biology , 2022 … R&D100 Award finalist 2019 SIMB Young Investigator Award 2013 Sustainable …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  … for investigating plant-microbe interactions. A final recent advance in CRAGE is the addition of CRISPR …
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Trent Northen
Joint BioEnergy Institute and the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to … and starvation modulate root exudation. Science Advances, 2024 10(1), Schadt, C., Martin, S., Carrell, A. et al. An … survey of Populus across genotypes and environments. 2024 Nature Sci Data. 11, 339. …
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