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CheckV can help researchers assess virus sequence fragments and data … an incomplete picture of a virus, and for viruses that have integrated into the host genome, these sequences may be … as well as sequences from the Global Ocean Virome 2.0 dataset based on open ocean samples. CheckV identified a …

… archaeal genomes provide new insights into an ancient metabolism. Methane is a greenhouse gas 20 times … 4, 2019, issue of Nature Microbiology , they mined the Integrated Microbial Genomes & Microbiomes (IMG/M) database … used IMG because the database already contains metagenome datasets from a variety of environments, as well as tools …

Researchers at the JGI develop a tool to quickly and accurately identify mobile genetic … of new viruses and plasmids quickly, even in massive datasets. geNomad employs two distinct approaches to …

…   To understand virus-host dynamics, computation helps fill in what … workflow, then uses a machine-learning model to give its integrated prediction a confidence score. The result is a … reflecting factors such as the quality and number of datasets for human microbiome data. In other environments, …

Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the archaeal … are abundant and yet exceptionally small, with mini genomes to match. As a result, they cannot process all of the …

… … DAN: You’re listening to the US Department of Energy Joint Genome Institute’s … the JGI. It’s doing some some fungal genome sequencing, I understand. Do you want to tell us about the origin of that, …

In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable … In 2016, Nikos Kyrpides at the JGI led a team that combed datasets from around the world, finding over 125,000 partial … factor of 16. The same year, the JGI expanded its existing Integrated Microbial Genomes & Microbiomes database to …