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Deciphering the evolution of flavin-dependent monooxygenase stereoselectivity using ancestral sequence reconstruction
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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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Section-level genome sequencing and comparative genomics of Aspergillus sections Cavernicolus and Usti
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The molecular dimension of microbial species: 3. Comparative genomics of Synechococcus strains with different light responses and in situ diel transcription patterns of associated putative ecotypes in the Mushroom Spring microbial mat
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Expanding Virophage Diversity
… maturation. Recently reported in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome … increased the number of known high quality virophage genome sequences 10-fold through computational approaches. By … available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) data suite—which …
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Statement on the Use of Genomics Data
… the HGP, the JGI has sustained its commitment to uploading sequence data generated on behalf of its user community to … first. For nearly 40 years, the International Nucleotide Sequence Database Collaboration (INSDC) has managed the … to be moved to private status. This will remove records from search indexes and BLAST databases until such time that …
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An Integrated Dataset to Understand Ecosystem Interaction
… the dynamic relationship between poplar trees and their microbial partners. The Science To help better understand … processes for the first time. By collecting data from 27 different poplar ( Populus trichocarpa ) trees, as … Summary The 27 samples studied by researchers came from two environments: natural forests and plantations …
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JGIota: Looking Back at Methane-Making Microbes
… gas: methane. Those emissions mainly come from gut microbes — the bacteria and archaea breaking down … 2010, the JGI has supported researchers studying those microbial methane-makers. Eventually, that could help us … still producing things like meat, milk, and wool. Hear more from JGI collaborators Sinead Leahy (New Zealand …
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The fungus that made itself at home
… habitat. The Science By comparing genetic information from similar organisms, researchers have gained insights on why the dry rot ( Serpula lacrymans ) is so destructive in … Serpula species, S. himantioides from Europe, that was sequenced and analyzed by the JGI. The researchers found …
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Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan
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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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Preferential retention of genes from one parental genome after polyploidy illustrates the nature and scope of the genomic conflicts induced by hybridization
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