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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… all the work that went into this program was the feedback from the graduate student interns; “it changed what I want … interns. For him, it was a special moment to see interns go from being “intimidated and nervous” at the beginning of the … was Travis Lawrence , the first graduate student intern from the 2014 cohort. After working on his post-doctoral …
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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The JGI Data Portal: Improving User Experience
JGI Data Portal , a pilot download experience accessible from JGI’s plant portal Phytozome . Although the Data Portal … are more broadly applicable to the download processes from the other JGI Portals, as well. “For thousands of … experience and beginning work on the download experience from MycoCosm and PhycoCosm, with the intent of eventually …
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Adaptations to marine versus terrestrial low temperature environments as revealed by comparative genomic analyses of the genus Psychrobacter
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Petra Byl
… who cultivates marine algae infected by giant viruses from subtropical, oligotrophic ocean gyres. She uses genomic …
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IMG/VR
… of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to … to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …
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JGI@25: Solving the Mystery of the Missing Oil
… the dispersed oil.   Terry Hazen on Oceanospirillales microbes   Terry Hazen Perspective on the Deepwater Horizon …
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New Research Sheds Light on Diversity in the Deep Sea
… and other microorganisms that live there.  Researchers from Portland State University and the University of Wisconsin-Madison collected 40 samples from five oceanic regions to better understand how these …
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Tracing the Evolution of Shiitake Mushrooms
Lentinula   The Science Shiitake mushrooms get their name from the same place they often source their nutrients — the … mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. … as well as atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and 13 samples …
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New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes
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Complete genome sequence of the thermophilic, hydrogen-oxidizing Bacillus tusciae type strain (T2T) and reclassification in the new genus, Kyrpidia gen. nov. as Kyrpidia tusciae comb. nov. and emendation of the family Alicyclobacillaceae da Costa and
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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