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The Megadata of Lake Mendota – Part 3: Boating Out to David Buoy
… final episode of our series on a giant metagenome assembly from Wisconsin’s Lake Mendota. In the last two episodes, …
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IMG/VR
… of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to … to browse and search through the more than 2 million viral sequences available in IMG/VR v3. …
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Year in Review: JGI’s 2018 Progress Report Available Now
Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were sequenced by the JGI (isolates here , here and here ), and … Copies are available online – click here to go download one from the archive of JGI Progress Reports. Print copies will …
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Crops as Tough as World Cup Turf
Torrres have looked into traits that could transfer from grasses into other crops.  One grass they studied just …
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Forest Fungi, Seagrass, and a New View of Symbiosis
… into seagrass meadows' carbon sequestration with insights from Adam Healey and Xiao Ma. And Karen Serrano and Benjamin …
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Scaling Up Existing Skill Sets
… bioinformatics internship opportunities in fields ranging from plant-microbe interactions to functional genomics. Hear from five of the Summer 2019 interns, who briefly shared … a non-academic research environment that is also distinct from private industry. I really liked the fairly flat …
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David Goodstein
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Adopt-A-Genome
In this episode, undergraduates adopt genomes that the JGI sequenced, but never published in the literature. These … papers, making the data available for future research. Hear from Rekha Seshadri (JGI) and Matt Escobar (California State …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… domesticate some 60 strains, inserting into them a genetic sequence that acts as a “landing pad.” Mouncey adds, “Once … relatives with the BGCs, JGI scientists could relieve BGCs from their former genetic repression, enabling scientists to …
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The Expanding Universe of Methane Metabolisms in Archaea
… provided by the other study co-authors, and reconstructed from these 10 metagenome-assembled genomes (MAGs) … because the database already contains metagenome datasets from a variety of environments, as well as tools for … Of the 10 MAGs reconstructed in the study, five were from undersampled or previously undescribed lineages, and …
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Nikos Kyrpides
… et al. (2021) Metagenomic compendium of 189,680 DNA viruses from the human gut microbiome. Nat Microbiol . 6(7):960-970. … ASM’s USFCC/J. Roger Porter Award (2018) Honorary Doctorate from the Aristotle University of Thessaloniki (2017) The van …
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THE Bioenergy Tree
… plants to harness for bioenergy. In this episode, hear from Oak Ridge National Laboratory scientists who have …
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