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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … users — have access to high-quality, assembled datasets from all of this information. The JGI aims to create … “When we proposed to do the Mendota time series, we knew that it was going to be more samples and more data per …
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High Five: Celebrating the JGI-UC Merced Genomics Internship Program
… More than 20 UC Merced students have contributed to the research of 13 JGI scientists since the program’s inception. In 2014, … California (UC), Merced assistant professor Suzanne Sindi from the School of Natural Sciences and started a program …
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JGI Workshops at 33rd Fungal Genetics Conference
… Wednesday, March 18: "Genomics of Environmental Opportunism: Fungal Adaptation at the Edge of Pathogenicity" Workshop Steven Ahrendt presenting  …
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Accelerating Metagenomics Discoveries with Deep Learning
… On July 6, scientists from Lawrence Berkeley National Laboratory (Berkeley Lab) … insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … chromosomal sequences in mixed-genome samples) with a new tool called MetaGNN (Prashant Pandey of CRD). The …
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Whole-Genome-Based Phylogeny and Divergence of the Genus Brucella▿ †
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Comparative and pangenomic analysis of the genus Streptomyces
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Cell by cell: population genetics in the wild
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Identification of mobile genetic elements with geNomad
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Decoding Yellowstone’s Microbial Mats
… began oxygenating Earth over two billion years ago. A team of researchers set out to Yellowstone National Park to study … mats. Along the way, they’ve encountered surprises, adopted new technologies, and made a few discoveries about the …
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JGI Earth Month: Wetlands Work in #TenHundredWords
… April marks both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both … close to our JGI hearts, we’re highlighting genomic science research that feels especially relevant to living on a … (Try it yourself  here .) She translated her abstract from a 2019 conference. Both versions appear side-by-side …
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W. Berkeley Kauffman
… user samples. His R&D work focuses on the development of new applications utilizing a variety of technologies to improve the JGI’s capabilities in the …
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Genome-Wide Association Studies across Environmental and Genetic Contexts Reveal Complex Genetic Architecture of Symbiotic Extended Phenotypes
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