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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with … Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth … And we’ve been working on isolating and cultivating and sequencing extremophile protists from a hypersaline alkaline …
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Genome sequence of the thermophilic fresh-water bacterium Spirochaeta caldaria type strain (H1T), reclassification of Spirochaeta caldaria, Spirochaeta stenostrepta and Spirochaeta zuelzerae in the genus Treponema as Treponema caldaria comb. nov.,
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working virtually with JGI mentors to investigate rigorous research projects, hone … of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional exploration of Phage Impact on Microbial Root … …
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Uri Neri
Uri Neri is a computational biologist who spends his days wrangling viral … and occasionally remembering to document his code. At JGI, he develops tools for viral discovery and analysis, … just "spicy messenger RNA", and that somewhere in the mess of genetic sequences lurks the next cool virus – if only our …
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Complete genome sequence of Planctomyces brasiliensis type strain (DSM 5305T), phylogenomic analysis and reclassification of Planctomycetes including the descriptions of Gimesia gen. nov., Planctopirus gen. nov. and Rubinisphaera gen. nov. and emended
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in … are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of …
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Eelgrass Proves to Be Much Younger Than We Thought
Recent study shows eelgrass has been around about 2.5 million … less than previously believed.  The Science Eelgrass, one of the most abundant plants in the ocean, originated in … duplication event — bioinformatics expertise, as well as sequencing for all global populations of eelgrass used in …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His responsibilities include the … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in microbial … Her current research focuses on leveraging thousands of metagenomic datasets from host-associated and … Futures … Metagenome Science Program … Education … Selected Publications … Awards and Service …
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint … Session and Rokhsar, building on work with former JGI postdoc Jarrod Chapman, developed a method to correctly …
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Fungus Fuels Tree Growth
… start pinning down how a fungal symbiont spurs growth of poplar, a potential biofuel feedstock.     The Science … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, through its  … (ARBRE) (ANR-11-LABX 0002 01 to F. Martin), JGI Community sequencing program project (CSP570, DE-AC02-05CH11231), and …
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