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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both …   ALISON:  Hey! I’m Alison Takemura at the US Department of Energy Joint Genome Institute, or JGI.  Two special days … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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iPHoP: A Matchmaker for Phages and their Hosts
… are microbes like bacteria, not humans. With metagenomic sequencing, researchers have found more of these viruses than ever before, in all kinds of ecosystems. However, matching these viral genetic …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth Promoting Rhizobacterium Graduate Interns … And we’ve been working on isolating and cultivating and sequencing extremophile protists from a hypersaline alkaline …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … the microorganisms had a close relationship. Then, using metagenomes and metatranscriptomes generated by the U.S. … Laboratory (Berkeley Lab), as well as publicly available metagenomes, they analyzed both host and hitchhiker genomes …
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Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908
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Training the Next Generation of Talent
DOE JGI, UC Merced Days after presenting the results of his summer research at the U.S. Department of Energy … transcribed instructions for building and maintaining cells through the use of deep-sequencing technologies. The internship program was born out …
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Forming Scientific Connections and Building Community
The 11th cohort of JGI-UC Merced interns pick highlights from their summer experiences. This year the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … Nandita Nath & W. Berkeley Kauffman Project: “ 16s Sequencing of Barcoded Microbial Genomes ” Morgan Lavenstein …
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IMG/VR
JGI's Simon Roux describes the structure and content of the IMG/VR v3 database (img.jgi.doe.gov/vr), the latest release of IMG database dedicated to viral genomes assembled from metagenomes. He also demonstrates briefly how to leverage …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – according to plan but unbeknownst to Ray and … and cleanup. The JGI provides integrated high-throughput sequencing and computational analysis that enable …
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Identifying the Microbial Cleanup Crew at a Superfund Site
PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a … down PCE into the chemical compound ethene. Applying genome sequencing and analysis, the researchers identified other … bioremediate toxic substances has led to the development of cost-effective environmental cleanup strategies. Summary …
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Nick Everson
Mr. Everson rejoined the JGI in 2020  and leads all aspects of JGI Operations which include the Safety, Finance, Human … Joint Genome Institute after serving as the Chief Operating Officer of the DOE Joint Bioenergy Institute and the Operations …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Over 40 percent of the cereal crop’s genes respond to drought stress. The Science Fields of drooping stalks and cracked earth are becoming common … nearly 400 root and leaf samples and helped analyze the sequencing datasets. The results from the first year showed …
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