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Genomic Encyclopedia of Bacterial and Archaeal Type Strains, Phase III: the genomes of soil and plant-associated and newly described type strains
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In depth metagenomic analysis in contrasting oil wells reveals syntrophic bacterial and archaeal associations for oil biodegradation in petroleum reservoirs
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Gene and transcript abundances of bacterial type III secretion systems from the rumen microbiome are correlated with methane yield in sheep
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IMG-ABC: new features for bacterial secondary metabolism analysis and targeted biosynthetic gene cluster discovery in thousands of microbial genomes
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From Berkeley to Binghamton: Tracking Strawberry Evolution
… also holds a joint appointment with the University of California, Berkeley. Nowadays, Session is an Assistant … and the  oilseed crop false flax – genomes that have been sequenced by the JGI – and the common strawberry, which is … clearly identifies the four subgenomes based on non-genic sequences.”  In his words, the history of the strawberry is …
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FICUS Overview
… The Facilities Integrating Collaborations for User Science (FICUS) initiative was established in 2014 … individual user facilities. A Letter of Intent is required. For accepted proposals, sequencing, synthesis, metabolomics and analysis will be provided for free to the PI by the Department of Energy’s funding of …
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Cataloging the Microbes that Manage the Health of River Systems
… States. They also provided multiple access points to the information. The team harnessed a community-science program to … available, river-focused microbial resource that provides information at multiple scales from genes to the community … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established …
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JGI-TMF Critical Minerals and Materials Call
… Minerals and Materials call represents a unique opportunity for researchers to request the capabilities and expertise of … science, accelerating discoveries and developing transformative bio-based technologies that address challenges in … and utilization of critical minerals and materials. For accepted proposals, sequencing, synthesis, metabolomics …
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Fungus Fuels Tree Growth
… always found among and within poplar trees, and in an effort to understand its influence on the plant, a team of … — scientists can better fine-tune their engineering efforts of both plants and root microbiomes to grow energy … in order to get  M. elongata and  I. europaea  genomes sequenced and annotated for this study. The team found that, …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… For the first time in several years, the DOE Joint Genome … UC Merced students this past summer. This year’s cohort for the JGI-UC Merced Internship Program was brimming with … mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… microbial mats at Yellowstone offer researchers an analog for studying early Earth conditions. Additionally, … thousands to millions of copies of a particular DNA sequence from just a few pieces of DNA. Summary The extreme … on Earth, and their broad distribution suggests that iron-oxidizing habitats, similar to those in Yellowstone from …
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10 From JGI on the 2019 Highly Cited Researchers List
… Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has … section as “those that rank in the top 1% by citations for papers published and cited between 2008-2018.” Less than … Nature Genetics, the work is part of a long-term project to sequence, annotate and analyze the genomes of more than 300 …
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