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… Emerald Nash and mentor Jonelle Basso, Experimental Study of Root Colonization by Resident Phages of a Plant Growth Promoting Rhizobacterium Graduate Interns … mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein Bendall and …

… archaea are estimated to produce 500 million tons of methane a year, which is over half the total global methane production. They are thought to use billions of tons of the carbon dioxide trapped in biomass each year … the microbes into small pools of cells that were then sequenced separately. From these samples, 111 …

… places that are considered to be inhospitable to humans are of particular interest. Matt also supports …

… with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory protein. Researchers demonstrated … the 5’-ends by 5’-end sequencing, from which those promoter sequences recognized by a given sigma factor are inferred. …

… for the global research community. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) has released … jointgeno.me/2024StrategicPlan .) This plan aligns the DOE Office of Science user facility with broader national … the genomes of individual organisms or environmental DNA, and then using advanced capabilities to understand …

… Can plants help humans attain a renewable energy future? Can they help lock … using gene editing technology to conscientiously mix traits of different plant species will help us get there. …

… Before joining the JGI, he has been working on the boundary of life science and computational science with notable stops at NERSC, IMBA (Institute of Molecular Biotechnology, Vienna) and the High Field MRI … team is unbureaucratic and driven by code, without putting humans in the loop. He is a big proponent of empowering …

… New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree for Lentinula. … as well as atmospheric carbon dioxide.  Summary Researchers sequenced 11 samples from Asia–Australasia and 13 samples …

… 600 million years ago. The Science By studying the genes of land plants’ closest algal relative,  Zygnematophyceae , … Berkeley National Laboratory (Berkeley Lab), scientists sequenced the genomes of four  Zygnematophyceae algae, which … plant resilience and productivity. The algal genomes sequences are available on the JGI’s  PhycoCosm portal. …

… Ancient  Chloroflexota s ditched their flagella and other traits when … place: hot spring-dwelling bacteria from the phylum C hloroflexota . Research shows that flagella were lost in other forms of  Chloroflexota that adapted to marine environments … ) conducted by the U.S. Department of Energy Joint Genome Institute …

… Maize produces a family of compounds that protects it against infections — using … enzymes. The Science Maize ( Zea mays ) produces a plethora of antibiotics called zealexins. Even though scientists have … in multiple, semi-redundant clusters on different maize chromosomes. The collective results demonstrate that the …

… Click the cards below to view downloadable pdfs of previous Progress Reports from the Joint Genome … FY19 Progress Report …